miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 56607 0.66 0.713133
Target:  5'- -cGCGCguggGCGACGaagGGCAGCUaCGACu -3'
miRNA:   3'- aaUGCG----UGCUGCaggUCGUCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 48100 0.66 0.713133
Target:  5'- -gACGCGCGAUGaugugacgcgCCGcGCgcaagAGCUCGGCg -3'
miRNA:   3'- aaUGCGUGCUGCa---------GGU-CG-----UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 38970 0.66 0.713133
Target:  5'- ---gGCACGGCG-CCGGCcgcgaucgcgAGCUCGcGCu -3'
miRNA:   3'- aaugCGUGCUGCaGGUCG----------UCGAGC-UG- -5'
23926 5' -55.8 NC_005262.1 + 54583 0.66 0.706694
Target:  5'- -gGCGCugaacgagaagauCGACGUCagcuacaacucGCGGCUCGGCu -3'
miRNA:   3'- aaUGCGu------------GCUGCAGgu---------CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 7632 0.66 0.702386
Target:  5'- gUugGCcgaauguCGACG-CCGGCGGCgaCGGCu -3'
miRNA:   3'- aAugCGu------GCUGCaGGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 25355 0.66 0.702386
Target:  5'- -aGCGUGcCGuCGUCCGGCGugauCUCGACc -3'
miRNA:   3'- aaUGCGU-GCuGCAGGUCGUc---GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 35078 0.66 0.702386
Target:  5'- -gGCGCGCGGCcUCgCGGCGGaaCUCGuCg -3'
miRNA:   3'- aaUGCGUGCUGcAG-GUCGUC--GAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 46635 0.66 0.702386
Target:  5'- -cGCGCGCGGCcuugCCGGCcuuCUCGAUu -3'
miRNA:   3'- aaUGCGUGCUGca--GGUCGuc-GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52081 0.66 0.702386
Target:  5'- aUGCGCAacaccUGAag--CAGCAGCUCGGCc -3'
miRNA:   3'- aAUGCGU-----GCUgcagGUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4550 0.66 0.702386
Target:  5'- cUGCGCGugcUGAgCGUgCAGCAGCUCc-- -3'
miRNA:   3'- aAUGCGU---GCU-GCAgGUCGUCGAGcug -5'
23926 5' -55.8 NC_005262.1 + 62738 0.66 0.702386
Target:  5'- -gGCGCGCuGGCGgucagcgCC-GCAGCauUCGGCa -3'
miRNA:   3'- aaUGCGUG-CUGCa------GGuCGUCG--AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 31921 0.66 0.701308
Target:  5'- -gACGCGCcgGACGUCgccaccugcuguaCGGCGGUguggCGACg -3'
miRNA:   3'- aaUGCGUG--CUGCAG-------------GUCGUCGa---GCUG- -5'
23926 5' -55.8 NC_005262.1 + 50663 0.66 0.700229
Target:  5'- -cGCGCGCGGCGgaccuaauugugCCA-CGGUUCGAa -3'
miRNA:   3'- aaUGCGUGCUGCa-----------GGUcGUCGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 20744 0.66 0.691571
Target:  5'- -gGCGCGCGGUG-CCGGCcGGgUCGAUg -3'
miRNA:   3'- aaUGCGUGCUGCaGGUCG-UCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 42100 0.66 0.691571
Target:  5'- cUGCGUGCccGCGUaCAGCAGCgCGGCg -3'
miRNA:   3'- aAUGCGUGc-UGCAgGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 44980 0.66 0.691571
Target:  5'- -aGgGC-CGACGUgCAGCAGUccgcgCGGCa -3'
miRNA:   3'- aaUgCGuGCUGCAgGUCGUCGa----GCUG- -5'
23926 5' -55.8 NC_005262.1 + 53115 0.66 0.691571
Target:  5'- cUGCGCAUGcaggauGCGUUCGGCcuGCUCGuuuGCg -3'
miRNA:   3'- aAUGCGUGC------UGCAGGUCGu-CGAGC---UG- -5'
23926 5' -55.8 NC_005262.1 + 28961 0.66 0.680699
Target:  5'- -cGCGCGCGAggaaGUCgGGgAGCugaUCGGCa -3'
miRNA:   3'- aaUGCGUGCUg---CAGgUCgUCG---AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 51447 0.66 0.680699
Target:  5'- --cCGuCACGACGUCC-GCAGacaUCGGa -3'
miRNA:   3'- aauGC-GUGCUGCAGGuCGUCg--AGCUg -5'
23926 5' -55.8 NC_005262.1 + 44157 0.66 0.680699
Target:  5'- -cGCGCGCGAuCGggCAGgAGCgCGGCg -3'
miRNA:   3'- aaUGCGUGCU-GCagGUCgUCGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.