miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 35078 0.66 0.702386
Target:  5'- -gGCGCGCGGCcUCgCGGCGGaaCUCGuCg -3'
miRNA:   3'- aaUGCGUGCUGcAG-GUCGUC--GAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 25355 0.66 0.702386
Target:  5'- -aGCGUGcCGuCGUCCGGCGugauCUCGACc -3'
miRNA:   3'- aaUGCGU-GCuGCAGGUCGUc---GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 41610 0.66 0.669781
Target:  5'- -gGCGUucuCGGCuUCCAGCuuCUCGACc -3'
miRNA:   3'- aaUGCGu--GCUGcAGGUCGucGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 2773 0.66 0.680699
Target:  5'- gUUGCGguuaGCaGACGUCUcggcgAGCGGCUUGAUg -3'
miRNA:   3'- -AAUGCg---UG-CUGCAGG-----UCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 50663 0.66 0.700229
Target:  5'- -cGCGCGCGGCGgaccuaauugugCCA-CGGUUCGAa -3'
miRNA:   3'- aaUGCGUGCUGCa-----------GGUcGUCGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 54583 0.66 0.706694
Target:  5'- -gGCGCugaacgagaagauCGACGUCagcuacaacucGCGGCUCGGCu -3'
miRNA:   3'- aaUGCGu------------GCUGCAGgu---------CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 11084 0.66 0.669781
Target:  5'- -aGCaGCGCGGCcucGUCCGGCgucGGC-CGGCg -3'
miRNA:   3'- aaUG-CGUGCUG---CAGGUCG---UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 31880 0.66 0.669781
Target:  5'- --gUGguCGACGUCCGGC-GCgUCGAg -3'
miRNA:   3'- aauGCguGCUGCAGGUCGuCG-AGCUg -5'
23926 5' -55.8 NC_005262.1 + 46321 0.66 0.680699
Target:  5'- -gGCGCGCGcuuCGUCCuGgAaCUCGGCg -3'
miRNA:   3'- aaUGCGUGCu--GCAGGuCgUcGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 5153 0.66 0.669781
Target:  5'- -aACuCGCG-CGcCCGGCcGCUCGACu -3'
miRNA:   3'- aaUGcGUGCuGCaGGUCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 58903 0.67 0.603891
Target:  5'- -cGCuGCGCGAUcaggCCGGCGGCcCGACc -3'
miRNA:   3'- aaUG-CGUGCUGca--GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 33880 0.67 0.613769
Target:  5'- -cGCGCGCGAgacgaucgugcguCGgCCGGCGGCcCGAUc -3'
miRNA:   3'- aaUGCGUGCU-------------GCaGGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 14357 0.67 0.614867
Target:  5'- cUUGCGCGCGuCGaCUGGCGGCggUGAUa -3'
miRNA:   3'- -AAUGCGUGCuGCaGGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 27060 0.67 0.614867
Target:  5'- -cACGCGCuacGCGUUCGuGCgcgAGCUCGGCg -3'
miRNA:   3'- aaUGCGUGc--UGCAGGU-CG---UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 6430 0.67 0.636856
Target:  5'- --uCGUGuCGGCGUCCuucguGUAGUUCGGCu -3'
miRNA:   3'- aauGCGU-GCUGCAGGu----CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 35236 0.67 0.636856
Target:  5'- -gGCgGCGCGAuCGg-CAGCGGCUgGGCg -3'
miRNA:   3'- aaUG-CGUGCU-GCagGUCGUCGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 15827 0.67 0.644552
Target:  5'- -cGCGCuCG-CGaUCCAGCAGUacgugaugcggcacUCGACg -3'
miRNA:   3'- aaUGCGuGCuGC-AGGUCGUCG--------------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 39144 0.67 0.625859
Target:  5'- -gACGCugGCGACGUagcugUCAGCGGUUCG-Cu -3'
miRNA:   3'- aaUGCG--UGCUGCA-----GGUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 7514 0.67 0.630258
Target:  5'- -gACGCAuccaucgggcagguuCGGCGgcgcgUCGGCGcGCUCGACg -3'
miRNA:   3'- aaUGCGU---------------GCUGCa----GGUCGU-CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 8897 0.67 0.658827
Target:  5'- --cCGCACGACgGUCCgcucuuGGguGCgCGGCg -3'
miRNA:   3'- aauGCGUGCUG-CAGG------UCguCGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.