miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 35236 0.67 0.636856
Target:  5'- -gGCgGCGCGAuCGg-CAGCGGCUgGGCg -3'
miRNA:   3'- aaUG-CGUGCU-GCagGUCGUCGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 15827 0.67 0.644552
Target:  5'- -cGCGCuCG-CGaUCCAGCAGUacgugaugcggcacUCGACg -3'
miRNA:   3'- aaUGCGuGCuGC-AGGUCGUCG--------------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 8897 0.67 0.658827
Target:  5'- --cCGCACGACgGUCCgcucuuGGguGCgCGGCg -3'
miRNA:   3'- aauGCGUGCUG-CAGG------UCguCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52421 0.67 0.624759
Target:  5'- -cGCGCGCGaACGUCguGC-GCuucaucgUCGACg -3'
miRNA:   3'- aaUGCGUGC-UGCAGguCGuCG-------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52556 0.67 0.658827
Target:  5'- gUGCGCagcGCGAuCGUCgCuGUcgAGCUCGGCg -3'
miRNA:   3'- aAUGCG---UGCU-GCAG-GuCG--UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 30757 0.67 0.658827
Target:  5'- ---aGUACGACGUCgGGCGGUaCGuCa -3'
miRNA:   3'- aaugCGUGCUGCAGgUCGUCGaGCuG- -5'
23926 5' -55.8 NC_005262.1 + 36237 0.67 0.65773
Target:  5'- -cGCuGCGCGGCGUCCucgccggGGCugAGCUCGcCc -3'
miRNA:   3'- aaUG-CGUGCUGCAGG-------UCG--UCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 30518 0.67 0.647849
Target:  5'- gUGCGCGCGAUGcgguacgCCucGCGGaUCGACa -3'
miRNA:   3'- aAUGCGUGCUGCa------GGu-CGUCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52122 0.67 0.647849
Target:  5'- gUUGCGCGCGAagcucugcCGgCCAgcguGCAGCgCGACg -3'
miRNA:   3'- -AAUGCGUGCU--------GCaGGU----CGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 45878 0.67 0.625859
Target:  5'- gUugGCGuCGGCGccgaUCGGCGGCUCGcCg -3'
miRNA:   3'- aAugCGU-GCUGCa---GGUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 8319 0.67 0.625859
Target:  5'- -gACGguCGACGcCCAGCucCUCGAa -3'
miRNA:   3'- aaUGCguGCUGCaGGUCGucGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 33161 0.67 0.614867
Target:  5'- -gACGCGgGcaccuugccgaGCGUCggCGGCGGCUCGAUc -3'
miRNA:   3'- aaUGCGUgC-----------UGCAG--GUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 28890 0.68 0.582019
Target:  5'- -gACGCACGACGaacgcagugUCCGGCgucgcgauccaGGCaCGGCa -3'
miRNA:   3'- aaUGCGUGCUGC---------AGGUCG-----------UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 17066 0.68 0.571142
Target:  5'- -cGCGCACGGCG-CCgauaGGCGcGCccgUCGACg -3'
miRNA:   3'- aaUGCGUGCUGCaGG----UCGU-CG---AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 17550 0.68 0.571142
Target:  5'- -cGCGCGCGAgG--CGGCAGCcgCGGCg -3'
miRNA:   3'- aaUGCGUGCUgCagGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 56834 0.68 0.592938
Target:  5'- cUACGCgcaccACGACGaCCAGaacaAGCUcCGGCg -3'
miRNA:   3'- aAUGCG-----UGCUGCaGGUCg---UCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 19622 0.68 0.582019
Target:  5'- -gGCGguCGGCGUCCAGCc---CGGCa -3'
miRNA:   3'- aaUGCguGCUGCAGGUCGucgaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 10505 0.68 0.592938
Target:  5'- ---aGCAUGGCGgCCAGCAGCagcgCGGg -3'
miRNA:   3'- aaugCGUGCUGCaGGUCGUCGa---GCUg -5'
23926 5' -55.8 NC_005262.1 + 48494 0.68 0.583109
Target:  5'- -gGCgGCGCGACGgcagccgcagguaaCAGCGcGCUCGACc -3'
miRNA:   3'- aaUG-CGUGCUGCag------------GUCGU-CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 33957 0.68 0.592938
Target:  5'- -aGCGaucccggaaCGCGGCGUCgAGCuGCUgGACg -3'
miRNA:   3'- aaUGC---------GUGCUGCAGgUCGuCGAgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.