miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 14054 0.68 0.592938
Target:  5'- -gGCGCcgcCGGCGUCgGuGCGGCUuCGGCc -3'
miRNA:   3'- aaUGCGu--GCUGCAGgU-CGUCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 488 0.68 0.549543
Target:  5'- -gGCGCGCGuguuccACGUcgacgccgagCCAGCAGC-CGGCc -3'
miRNA:   3'- aaUGCGUGC------UGCA----------GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 11901 0.68 0.538838
Target:  5'- -aGCGguCGGugcCGUUCGGCGGCgUCGGCu -3'
miRNA:   3'- aaUGCguGCU---GCAGGUCGUCG-AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 19622 0.68 0.582019
Target:  5'- -gGCGguCGGCGUCCAGCc---CGGCa -3'
miRNA:   3'- aaUGCguGCUGCAGGUCGucgaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 28890 0.68 0.582019
Target:  5'- -gACGCACGACGaacgcagugUCCGGCgucgcgauccaGGCaCGGCa -3'
miRNA:   3'- aaUGCGUGCUGC---------AGGUCG-----------UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 48494 0.68 0.583109
Target:  5'- -gGCgGCGCGACGgcagccgcagguaaCAGCGcGCUCGACc -3'
miRNA:   3'- aaUG-CGUGCUGCag------------GUCGU-CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 10505 0.68 0.592938
Target:  5'- ---aGCAUGGCGgCCAGCAGCagcgCGGg -3'
miRNA:   3'- aaugCGUGCUGCaGGUCGUCGa---GCUg -5'
23926 5' -55.8 NC_005262.1 + 33957 0.68 0.592938
Target:  5'- -aGCGaucccggaaCGCGGCGUCgAGCuGCUgGACg -3'
miRNA:   3'- aaUGC---------GUGCUGCAGgUCGuCGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 56834 0.68 0.592938
Target:  5'- cUACGCgcaccACGACGaCCAGaacaAGCUcCGGCg -3'
miRNA:   3'- aAUGCG-----UGCUGCaGGUCg---UCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 17550 0.68 0.571142
Target:  5'- -cGCGCGCGAgG--CGGCAGCcgCGGCg -3'
miRNA:   3'- aaUGCGUGCUgCagGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 2841 0.68 0.571142
Target:  5'- uUUGCGCGCuGGCGUgCCcGCAcgaGCUUGGCc -3'
miRNA:   3'- -AAUGCGUG-CUGCA-GGuCGU---CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 34036 0.68 0.560314
Target:  5'- gUGCGcCGCGuCGaUCGGCAguuGCUCGACg -3'
miRNA:   3'- aAUGC-GUGCuGCaGGUCGU---CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52880 0.68 0.550617
Target:  5'- -aGCGCACGACGcagucgcgcacuacaCCAGCGagggcgugauccGCUCGAUc -3'
miRNA:   3'- aaUGCGUGCUGCa--------------GGUCGU------------CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 21327 0.68 0.549543
Target:  5'- cUACGCGC-ACGUCCAGgaGGCgaUCGAg -3'
miRNA:   3'- aAUGCGUGcUGCAGGUCg-UCG--AGCUg -5'
23926 5' -55.8 NC_005262.1 + 59402 0.68 0.549543
Target:  5'- -gGCGCGCGACaUCgCAcGCGcaacGCUCGACc -3'
miRNA:   3'- aaUGCGUGCUGcAG-GU-CGU----CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52362 0.68 0.560314
Target:  5'- -cGgGCGCGGCGUgucgcgcaccuUCGGCGGCcCGGCg -3'
miRNA:   3'- aaUgCGUGCUGCA-----------GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4833 0.68 0.571142
Target:  5'- --cCGC-CGGCGgCCGGCuGGUUCGACu -3'
miRNA:   3'- aauGCGuGCUGCaGGUCG-UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4418 0.68 0.571142
Target:  5'- cUGCuGCGCGAgCG-CCuGgAGCUCGGCg -3'
miRNA:   3'- aAUG-CGUGCU-GCaGGuCgUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 17760 0.68 0.571142
Target:  5'- -cGCGCAUGACuUCgUAGUAGCgCGGCa -3'
miRNA:   3'- aaUGCGUGCUGcAG-GUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 47406 0.69 0.50718
Target:  5'- ---aGCGCGACGcgCagaaaAGCaAGCUCGACg -3'
miRNA:   3'- aaugCGUGCUGCa-Gg----UCG-UCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.