miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 29818 1.08 0.00111
Target:  5'- gUUACGCACGACGUCCAGCAGCUCGACg -3'
miRNA:   3'- -AAUGCGUGCUGCAGGUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 43846 0.8 0.111047
Target:  5'- -cGCGCGCGGCGgugcgCCGGCAGgacCUCGGCg -3'
miRNA:   3'- aaUGCGUGCUGCa----GGUCGUC---GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 57562 0.78 0.14677
Target:  5'- gUGCGCGCGGCGggcUUCAGCAuCUCGGCg -3'
miRNA:   3'- aAUGCGUGCUGC---AGGUCGUcGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 11379 0.78 0.14677
Target:  5'- -aGCGCACGACGUUCGcgcGCGGCUCcACg -3'
miRNA:   3'- aaUGCGUGCUGCAGGU---CGUCGAGcUG- -5'
23926 5' -55.8 NC_005262.1 + 14937 0.77 0.1638
Target:  5'- gUUGCGCGgGguGCGUCCAGCGG-UCGACa -3'
miRNA:   3'- -AAUGCGUgC--UGCAGGUCGUCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 6978 0.76 0.203253
Target:  5'- gUGCGCGuacucaGGCGcUCCAGCcGCUCGACg -3'
miRNA:   3'- aAUGCGUg-----CUGC-AGGUCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 39834 0.75 0.220059
Target:  5'- aUGCGCGCGA--UCCAGCAGUugagcagugaagUCGACg -3'
miRNA:   3'- aAUGCGUGCUgcAGGUCGUCG------------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 26025 0.75 0.220059
Target:  5'- -cACGUACuACGcCCAGCAGCUCGcCg -3'
miRNA:   3'- aaUGCGUGcUGCaGGUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 51331 0.75 0.234346
Target:  5'- -cGCGCGCGGCaagaucgaauccgCCAuGCAGCUCGGCa -3'
miRNA:   3'- aaUGCGUGCUGca-----------GGU-CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 15105 0.75 0.238037
Target:  5'- cUGCgGCGCGGCGUCCGGCuggaacgcgcuGGC-CGGCa -3'
miRNA:   3'- aAUG-CGUGCUGCAGGUCG-----------UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 50918 0.75 0.238037
Target:  5'- aUGCGCACGAgCGUCaccgugcacggCAGCgcgaAGCUCGGCa -3'
miRNA:   3'- aAUGCGUGCU-GCAG-----------GUCG----UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52984 0.75 0.244297
Target:  5'- aUGCGCugGucgugauCGUCgCGGCAGCUCGcGCa -3'
miRNA:   3'- aAUGCGugCu------GCAG-GUCGUCGAGC-UG- -5'
23926 5' -55.8 NC_005262.1 + 51221 0.74 0.257227
Target:  5'- --uCGC-CGGCGgcagCAGCAGCUCGACg -3'
miRNA:   3'- aauGCGuGCUGCag--GUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 15713 0.73 0.314568
Target:  5'- -cGCGCGuCGGCGcCgGGCGGCUCGuCg -3'
miRNA:   3'- aaUGCGU-GCUGCaGgUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 17499 0.73 0.322379
Target:  5'- -cGCGCGCGACGcgucgaUCGGCAGCcUGACg -3'
miRNA:   3'- aaUGCGUGCUGCa-----GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 35781 0.73 0.322379
Target:  5'- -cGCGCGCGAgCGUUCGacuuCAGCUCGAUa -3'
miRNA:   3'- aaUGCGUGCU-GCAGGUc---GUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 55269 0.72 0.330334
Target:  5'- -cACGCAcuCGGCGUUCGGCcGCaUCGGCa -3'
miRNA:   3'- aaUGCGU--GCUGCAGGUCGuCG-AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 45695 0.72 0.330334
Target:  5'- gUGCGCAuCGAgGgCCGGCAGC-CGGCc -3'
miRNA:   3'- aAUGCGU-GCUgCaGGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 20725 0.72 0.338433
Target:  5'- -cACGguCG-CGUCgcuCGGCAGCUCGACc -3'
miRNA:   3'- aaUGCguGCuGCAG---GUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 23923 0.72 0.345845
Target:  5'- -gGCGUuCGGCaaggcguuucuggGUCCAGCaAGCUCGGCg -3'
miRNA:   3'- aaUGCGuGCUG-------------CAGGUCG-UCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.