Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23926 | 5' | -55.8 | NC_005262.1 | + | 18118 | 0.72 | 0.355061 |
Target: 5'- aUGCGCACGAaGUgCGGCAccaugcGCUCGAUc -3' miRNA: 3'- aAUGCGUGCUgCAgGUCGU------CGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 22691 | 0.72 | 0.372256 |
Target: 5'- -cGCGCAcgaucuCGACGUggCCGGCGGCgUUGACg -3' miRNA: 3'- aaUGCGU------GCUGCA--GGUCGUCG-AGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 28161 | 0.72 | 0.372256 |
Target: 5'- -aGCGCGCGGCGcaacugcgCgCGGCGGCcgUCGACa -3' miRNA: 3'- aaUGCGUGCUGCa-------G-GUCGUCG--AGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 60559 | 0.71 | 0.381063 |
Target: 5'- -cACGC-UGACG-CCGGC-GCUCGGCg -3' miRNA: 3'- aaUGCGuGCUGCaGGUCGuCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 5130 | 0.71 | 0.381063 |
Target: 5'- -cAUGCGCGACGggCGGCGcugauccuGCUCGGCg -3' miRNA: 3'- aaUGCGUGCUGCagGUCGU--------CGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 44713 | 0.71 | 0.381063 |
Target: 5'- -cGCGCGCGAgGaaauGCAGCUCGGCc -3' miRNA: 3'- aaUGCGUGCUgCagguCGUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 37518 | 0.71 | 0.390009 |
Target: 5'- -gACGCACGugGUCCGcgucguGCGGCagGAa -3' miRNA: 3'- aaUGCGUGCugCAGGU------CGUCGagCUg -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 37881 | 0.71 | 0.39909 |
Target: 5'- -cGCGCgugGCGACGUaCCAugcgcGCuGCUCGGCa -3' miRNA: 3'- aaUGCG---UGCUGCA-GGU-----CGuCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 25535 | 0.71 | 0.39909 |
Target: 5'- -cGCGuCGCGACGUCCgugcgcGGCGGCaCGAUc -3' miRNA: 3'- aaUGC-GUGCUGCAGG------UCGUCGaGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 9478 | 0.71 | 0.39909 |
Target: 5'- -aGCGCgucgAUGACGUCCuGGCGGCUCa-- -3' miRNA: 3'- aaUGCG----UGCUGCAGG-UCGUCGAGcug -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 30895 | 0.71 | 0.39909 |
Target: 5'- -cGCGUGCGACGccgCCGGCuuGGC-CGACg -3' miRNA: 3'- aaUGCGUGCUGCa--GGUCG--UCGaGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 33662 | 0.71 | 0.408306 |
Target: 5'- -gGCGCuuCGGCGaCCAGCAGCggcaCGAUc -3' miRNA: 3'- aaUGCGu-GCUGCaGGUCGUCGa---GCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 6252 | 0.71 | 0.41203 |
Target: 5'- -cGCGCAcggucuuugccgccuCGAUGauggUCAGCAGCUCGGCc -3' miRNA: 3'- aaUGCGU---------------GCUGCa---GGUCGUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 11578 | 0.71 | 0.417654 |
Target: 5'- cUAUGCcgGCGGCGgCCAGC-GCUCGAg -3' miRNA: 3'- aAUGCG--UGCUGCaGGUCGuCGAGCUg -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 26412 | 0.71 | 0.417654 |
Target: 5'- -gACGCGCGACGcguUCCcGCugcucuGGUUCGACg -3' miRNA: 3'- aaUGCGUGCUGC---AGGuCG------UCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 49187 | 0.7 | 0.427131 |
Target: 5'- -cGCGCACGGCGaugaucUCCGGCAuGCU-GGCc -3' miRNA: 3'- aaUGCGUGCUGC------AGGUCGU-CGAgCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 2015 | 0.7 | 0.44646 |
Target: 5'- -cACGcCACGGCGcugcuUCguGCuGCUCGACg -3' miRNA: 3'- aaUGC-GUGCUGC-----AGguCGuCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 28836 | 0.7 | 0.44646 |
Target: 5'- -cGCGCucgauccaGAUGaUCCAGCAGgUCGGCg -3' miRNA: 3'- aaUGCGug------CUGC-AGGUCGUCgAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 17606 | 0.7 | 0.456306 |
Target: 5'- -aGCGCGCGgagcuggaGCG-CCAGCAGCgCGAg -3' miRNA: 3'- aaUGCGUGC--------UGCaGGUCGUCGaGCUg -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 32921 | 0.7 | 0.466267 |
Target: 5'- -cACGCGCGACGcucCCAGCGccuucacgaucGCUcCGACc -3' miRNA: 3'- aaUGCGUGCUGCa--GGUCGU-----------CGA-GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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