miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 46374 0.7 0.466267
Target:  5'- -aGCGCAgGuCGUCCAGCGuggcgcccagcGuCUCGGCa -3'
miRNA:   3'- aaUGCGUgCuGCAGGUCGU-----------C-GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 44780 0.7 0.466267
Target:  5'- -aGCGCGCGGCaggCCG--AGCUCGACg -3'
miRNA:   3'- aaUGCGUGCUGca-GGUcgUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 42316 0.7 0.466267
Target:  5'- gUACGCAUGGCcgaugccCCAGCAGUagCGGCa -3'
miRNA:   3'- aAUGCGUGCUGca-----GGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 2491 0.69 0.48652
Target:  5'- -cGCGCuuGGCGaCCAGCAGCaaccCGAUa -3'
miRNA:   3'- aaUGCGugCUGCaGGUCGUCGa---GCUG- -5'
23926 5' -55.8 NC_005262.1 + 34754 0.69 0.48652
Target:  5'- --gUGCGCGuCGUgCCGGCgccgcucgAGCUCGGCg -3'
miRNA:   3'- aauGCGUGCuGCA-GGUCG--------UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4557 0.69 0.496802
Target:  5'- -cGCGCGCGGCGcaucucgcgCCAGCGGCggCGcuGCu -3'
miRNA:   3'- aaUGCGUGCUGCa--------GGUCGUCGa-GC--UG- -5'
23926 5' -55.8 NC_005262.1 + 53457 0.69 0.504057
Target:  5'- -gGCGCcggcgucgaggacaACGGCGUgaAGUGGCUCGGCa -3'
miRNA:   3'- aaUGCG--------------UGCUGCAggUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52612 0.69 0.50718
Target:  5'- -cGCGCACGAUca-CGGCGGCgucgUCGGCg -3'
miRNA:   3'- aaUGCGUGCUGcagGUCGUCG----AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 47406 0.69 0.50718
Target:  5'- ---aGCGCGACGcgCagaaaAGCaAGCUCGACg -3'
miRNA:   3'- aaugCGUGCUGCa-Gg----UCG-UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 62825 0.69 0.50718
Target:  5'- -gACGUGcCGACGaUCGGCcacGGCUCGACg -3'
miRNA:   3'- aaUGCGU-GCUGCaGGUCG---UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 56802 0.69 0.50718
Target:  5'- -aAgGC-CGACGUCgAGCGGCUgGAg -3'
miRNA:   3'- aaUgCGuGCUGCAGgUCGUCGAgCUg -5'
23926 5' -55.8 NC_005262.1 + 10589 0.69 0.50718
Target:  5'- -aGCaGCGCGGCG-CgAGCGGCUuCGAUg -3'
miRNA:   3'- aaUG-CGUGCUGCaGgUCGUCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 2403 0.69 0.51765
Target:  5'- -cGCGCGCGAgGUCguagUAGCGGCUgcgcagCGGCu -3'
miRNA:   3'- aaUGCGUGCUgCAG----GUCGUCGA------GCUG- -5'
23926 5' -55.8 NC_005262.1 + 29724 0.69 0.51765
Target:  5'- -cGCGCGCGGCGUgCCAGUccgGGUUCu-- -3'
miRNA:   3'- aaUGCGUGCUGCA-GGUCG---UCGAGcug -5'
23926 5' -55.8 NC_005262.1 + 53915 0.69 0.528204
Target:  5'- --cUGCGCGACGcgCUGaagcaggcGCAGCUCGACc -3'
miRNA:   3'- aauGCGUGCUGCa-GGU--------CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 54812 0.69 0.528204
Target:  5'- aUGCGCGCGGCGUUUAGCcgauggauuuGGaC-CGACa -3'
miRNA:   3'- aAUGCGUGCUGCAGGUCG----------UC-GaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 11901 0.68 0.538838
Target:  5'- -aGCGguCGGugcCGUUCGGCGGCgUCGGCu -3'
miRNA:   3'- aaUGCguGCU---GCAGGUCGUCG-AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 21327 0.68 0.549543
Target:  5'- cUACGCGC-ACGUCCAGgaGGCgaUCGAg -3'
miRNA:   3'- aAUGCGUGcUGCAGGUCg-UCG--AGCUg -5'
23926 5' -55.8 NC_005262.1 + 61764 0.68 0.549543
Target:  5'- cUACGCGCccCGUCgAGCAGCaCGAa -3'
miRNA:   3'- aAUGCGUGcuGCAGgUCGUCGaGCUg -5'
23926 5' -55.8 NC_005262.1 + 12279 0.68 0.549543
Target:  5'- gUUGCGCACGGuCGUCUcgccguuGCGGC-CGAUc -3'
miRNA:   3'- -AAUGCGUGCU-GCAGGu------CGUCGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.