miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 28961 0.66 0.680699
Target:  5'- -cGCGCGCGAggaaGUCgGGgAGCugaUCGGCa -3'
miRNA:   3'- aaUGCGUGCUg---CAGgUCgUCG---AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 51447 0.66 0.680699
Target:  5'- --cCGuCACGACGUCC-GCAGacaUCGGa -3'
miRNA:   3'- aauGC-GUGCUGCAGGuCGUCg--AGCUg -5'
23926 5' -55.8 NC_005262.1 + 44157 0.66 0.680699
Target:  5'- -cGCGCGCGAuCGggCAGgAGCgCGGCg -3'
miRNA:   3'- aaUGCGUGCU-GCagGUCgUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 37659 0.66 0.669781
Target:  5'- -cGCGCAUGAucuaCGUUCAaggaucgggcguGCAGCUCGuCg -3'
miRNA:   3'- aaUGCGUGCU----GCAGGU------------CGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 11084 0.66 0.669781
Target:  5'- -aGCaGCGCGGCcucGUCCGGCgucGGC-CGGCg -3'
miRNA:   3'- aaUG-CGUGCUG---CAGGUCG---UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 5153 0.66 0.669781
Target:  5'- -aACuCGCG-CGcCCGGCcGCUCGACu -3'
miRNA:   3'- aaUGcGUGCuGCaGGUCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 31880 0.66 0.669781
Target:  5'- --gUGguCGACGUCCGGC-GCgUCGAg -3'
miRNA:   3'- aauGCguGCUGCAGGUCGuCG-AGCUg -5'
23926 5' -55.8 NC_005262.1 + 3733 0.66 0.669781
Target:  5'- cUGCGcCugGAUGgguUCCGcGCGGCUCaGGCg -3'
miRNA:   3'- aAUGC-GugCUGC---AGGU-CGUCGAG-CUG- -5'
23926 5' -55.8 NC_005262.1 + 41610 0.66 0.669781
Target:  5'- -gGCGUucuCGGCuUCCAGCuuCUCGACc -3'
miRNA:   3'- aaUGCGu--GCUGcAGGUCGucGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 2663 0.66 0.666498
Target:  5'- -gGCGCcggGCGGCGUCCuggccgccguagcaAGCucacGCUCGAg -3'
miRNA:   3'- aaUGCG---UGCUGCAGG--------------UCGu---CGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 8897 0.67 0.658827
Target:  5'- --cCGCACGACgGUCCgcucuuGGguGCgCGGCg -3'
miRNA:   3'- aauGCGUGCUG-CAGG------UCguCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52556 0.67 0.658827
Target:  5'- gUGCGCagcGCGAuCGUCgCuGUcgAGCUCGGCg -3'
miRNA:   3'- aAUGCG---UGCU-GCAG-GuCG--UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 30757 0.67 0.658827
Target:  5'- ---aGUACGACGUCgGGCGGUaCGuCa -3'
miRNA:   3'- aaugCGUGCUGCAGgUCGUCGaGCuG- -5'
23926 5' -55.8 NC_005262.1 + 36237 0.67 0.65773
Target:  5'- -cGCuGCGCGGCGUCCucgccggGGCugAGCUCGcCc -3'
miRNA:   3'- aaUG-CGUGCUGCAGG-------UCG--UCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 30518 0.67 0.647849
Target:  5'- gUGCGCGCGAUGcgguacgCCucGCGGaUCGACa -3'
miRNA:   3'- aAUGCGUGCUGCa------GGu-CGUCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52122 0.67 0.647849
Target:  5'- gUUGCGCGCGAagcucugcCGgCCAgcguGCAGCgCGACg -3'
miRNA:   3'- -AAUGCGUGCU--------GCaGGU----CGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 15827 0.67 0.644552
Target:  5'- -cGCGCuCG-CGaUCCAGCAGUacgugaugcggcacUCGACg -3'
miRNA:   3'- aaUGCGuGCuGC-AGGUCGUCG--------------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 6430 0.67 0.636856
Target:  5'- --uCGUGuCGGCGUCCuucguGUAGUUCGGCu -3'
miRNA:   3'- aauGCGU-GCUGCAGGu----CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 35236 0.67 0.636856
Target:  5'- -gGCgGCGCGAuCGg-CAGCGGCUgGGCg -3'
miRNA:   3'- aaUG-CGUGCU-GCagGUCGUCGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 7514 0.67 0.630258
Target:  5'- -gACGCAuccaucgggcagguuCGGCGgcgcgUCGGCGcGCUCGACg -3'
miRNA:   3'- aaUGCGU---------------GCUGCa----GGUCGU-CGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.