miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 45878 0.67 0.625859
Target:  5'- gUugGCGuCGGCGccgaUCGGCGGCUCGcCg -3'
miRNA:   3'- aAugCGU-GCUGCa---GGUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 8319 0.67 0.625859
Target:  5'- -gACGguCGACGcCCAGCucCUCGAa -3'
miRNA:   3'- aaUGCguGCUGCaGGUCGucGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 39144 0.67 0.625859
Target:  5'- -gACGCugGCGACGUagcugUCAGCGGUUCG-Cu -3'
miRNA:   3'- aaUGCG--UGCUGCA-----GGUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 28975 0.67 0.625859
Target:  5'- cUGCGCcuCGcCuUCCAGCAGCaCGGCg -3'
miRNA:   3'- aAUGCGu-GCuGcAGGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52421 0.67 0.624759
Target:  5'- -cGCGCGCGaACGUCguGC-GCuucaucgUCGACg -3'
miRNA:   3'- aaUGCGUGC-UGCAGguCGuCG-------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 43916 0.67 0.614867
Target:  5'- ---aGCGCGGCG-CCAaccGCGGC-CGACu -3'
miRNA:   3'- aaugCGUGCUGCaGGU---CGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 27060 0.67 0.614867
Target:  5'- -cACGCGCuacGCGUUCGuGCgcgAGCUCGGCg -3'
miRNA:   3'- aaUGCGUGc--UGCAGGU-CG---UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 33161 0.67 0.614867
Target:  5'- -gACGCGgGcaccuugccgaGCGUCggCGGCGGCUCGAUc -3'
miRNA:   3'- aaUGCGUgC-----------UGCAG--GUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 63283 0.67 0.614867
Target:  5'- --cUGCuuGACGgCCGGCugcuGGCUCGGCg -3'
miRNA:   3'- aauGCGugCUGCaGGUCG----UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 14357 0.67 0.614867
Target:  5'- cUUGCGCGCGuCGaCUGGCGGCggUGAUa -3'
miRNA:   3'- -AAUGCGUGCuGCaGGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 33880 0.67 0.613769
Target:  5'- -cGCGCGCGAgacgaucgugcguCGgCCGGCGGCcCGAUc -3'
miRNA:   3'- aaUGCGUGCU-------------GCaGGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 58903 0.67 0.603891
Target:  5'- -cGCuGCGCGAUcaggCCGGCGGCcCGACc -3'
miRNA:   3'- aaUG-CGUGCUGca--GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 56834 0.68 0.592938
Target:  5'- cUACGCgcaccACGACGaCCAGaacaAGCUcCGGCg -3'
miRNA:   3'- aAUGCG-----UGCUGCaGGUCg---UCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 10505 0.68 0.592938
Target:  5'- ---aGCAUGGCGgCCAGCAGCagcgCGGg -3'
miRNA:   3'- aaugCGUGCUGCaGGUCGUCGa---GCUg -5'
23926 5' -55.8 NC_005262.1 + 40350 0.68 0.592938
Target:  5'- -cGCGCAUG-CG-CCAGUcgucggacGGCUCGAUg -3'
miRNA:   3'- aaUGCGUGCuGCaGGUCG--------UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4656 0.68 0.592938
Target:  5'- aUGCGCGCGGCGacgcggcCCGGCcGGUUCGcCu -3'
miRNA:   3'- aAUGCGUGCUGCa------GGUCG-UCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 14054 0.68 0.592938
Target:  5'- -gGCGCcgcCGGCGUCgGuGCGGCUuCGGCc -3'
miRNA:   3'- aaUGCGu--GCUGCAGgU-CGUCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 33957 0.68 0.592938
Target:  5'- -aGCGaucccggaaCGCGGCGUCgAGCuGCUgGACg -3'
miRNA:   3'- aaUGC---------GUGCUGCAGgUCGuCGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 20316 0.68 0.591845
Target:  5'- -cGCGUA-GACGgucgCCgccacgaAGCGGCUCGACu -3'
miRNA:   3'- aaUGCGUgCUGCa---GG-------UCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 48494 0.68 0.583109
Target:  5'- -gGCgGCGCGACGgcagccgcagguaaCAGCGcGCUCGACc -3'
miRNA:   3'- aaUG-CGUGCUGCag------------GUCGU-CGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.