miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 28890 0.68 0.582019
Target:  5'- -gACGCACGACGaacgcagugUCCGGCgucgcgauccaGGCaCGGCa -3'
miRNA:   3'- aaUGCGUGCUGC---------AGGUCG-----------UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 19622 0.68 0.582019
Target:  5'- -gGCGguCGGCGUCCAGCc---CGGCa -3'
miRNA:   3'- aaUGCguGCUGCAGGUCGucgaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 46144 0.68 0.582019
Target:  5'- -gGCGCGCuGGCGggcgaucucugCCuGCuGCUCGGCg -3'
miRNA:   3'- aaUGCGUG-CUGCa----------GGuCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 47380 0.68 0.582019
Target:  5'- cUUGCGCcucGCGGCGcagaaucCCGGCGGC-CGGCc -3'
miRNA:   3'- -AAUGCG---UGCUGCa------GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 2841 0.68 0.571142
Target:  5'- uUUGCGCGCuGGCGUgCCcGCAcgaGCUUGGCc -3'
miRNA:   3'- -AAUGCGUG-CUGCA-GGuCGU---CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 17550 0.68 0.571142
Target:  5'- -cGCGCGCGAgG--CGGCAGCcgCGGCg -3'
miRNA:   3'- aaUGCGUGCUgCagGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 17760 0.68 0.571142
Target:  5'- -cGCGCAUGACuUCgUAGUAGCgCGGCa -3'
miRNA:   3'- aaUGCGUGCUGcAG-GUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4418 0.68 0.571142
Target:  5'- cUGCuGCGCGAgCG-CCuGgAGCUCGGCg -3'
miRNA:   3'- aAUG-CGUGCU-GCaGGuCgUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4833 0.68 0.571142
Target:  5'- --cCGC-CGGCGgCCGGCuGGUUCGACu -3'
miRNA:   3'- aauGCGuGCUGCaGGUCG-UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 17066 0.68 0.571142
Target:  5'- -cGCGCACGGCG-CCgauaGGCGcGCccgUCGACg -3'
miRNA:   3'- aaUGCGUGCUGCaGG----UCGU-CG---AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 34036 0.68 0.560314
Target:  5'- gUGCGcCGCGuCGaUCGGCAguuGCUCGACg -3'
miRNA:   3'- aAUGC-GUGCuGCaGGUCGU---CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52362 0.68 0.560314
Target:  5'- -cGgGCGCGGCGUgucgcgcaccuUCGGCGGCcCGGCg -3'
miRNA:   3'- aaUgCGUGCUGCA-----------GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52880 0.68 0.550617
Target:  5'- -aGCGCACGACGcagucgcgcacuacaCCAGCGagggcgugauccGCUCGAUc -3'
miRNA:   3'- aaUGCGUGCUGCa--------------GGUCGU------------CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 488 0.68 0.549543
Target:  5'- -gGCGCGCGuguuccACGUcgacgccgagCCAGCAGC-CGGCc -3'
miRNA:   3'- aaUGCGUGC------UGCA----------GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 12279 0.68 0.549543
Target:  5'- gUUGCGCACGGuCGUCUcgccguuGCGGC-CGAUc -3'
miRNA:   3'- -AAUGCGUGCU-GCAGGu------CGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 61764 0.68 0.549543
Target:  5'- cUACGCGCccCGUCgAGCAGCaCGAa -3'
miRNA:   3'- aAUGCGUGcuGCAGgUCGUCGaGCUg -5'
23926 5' -55.8 NC_005262.1 + 59402 0.68 0.549543
Target:  5'- -gGCGCGCGACaUCgCAcGCGcaacGCUCGACc -3'
miRNA:   3'- aaUGCGUGCUGcAG-GU-CGU----CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 21327 0.68 0.549543
Target:  5'- cUACGCGC-ACGUCCAGgaGGCgaUCGAg -3'
miRNA:   3'- aAUGCGUGcUGCAGGUCg-UCG--AGCUg -5'
23926 5' -55.8 NC_005262.1 + 11901 0.68 0.538838
Target:  5'- -aGCGguCGGugcCGUUCGGCGGCgUCGGCu -3'
miRNA:   3'- aaUGCguGCU---GCAGGUCGUCG-AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 54812 0.69 0.528204
Target:  5'- aUGCGCGCGGCGUUUAGCcgauggauuuGGaC-CGACa -3'
miRNA:   3'- aAUGCGUGCUGCAGGUCG----------UC-GaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.