Results 81 - 100 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23926 | 5' | -55.8 | NC_005262.1 | + | 53915 | 0.69 | 0.528204 |
Target: 5'- --cUGCGCGACGcgCUGaagcaggcGCAGCUCGACc -3' miRNA: 3'- aauGCGUGCUGCa-GGU--------CGUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 29724 | 0.69 | 0.51765 |
Target: 5'- -cGCGCGCGGCGUgCCAGUccgGGUUCu-- -3' miRNA: 3'- aaUGCGUGCUGCA-GGUCG---UCGAGcug -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 2403 | 0.69 | 0.51765 |
Target: 5'- -cGCGCGCGAgGUCguagUAGCGGCUgcgcagCGGCu -3' miRNA: 3'- aaUGCGUGCUgCAG----GUCGUCGA------GCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 52612 | 0.69 | 0.50718 |
Target: 5'- -cGCGCACGAUca-CGGCGGCgucgUCGGCg -3' miRNA: 3'- aaUGCGUGCUGcagGUCGUCG----AGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 62825 | 0.69 | 0.50718 |
Target: 5'- -gACGUGcCGACGaUCGGCcacGGCUCGACg -3' miRNA: 3'- aaUGCGU-GCUGCaGGUCG---UCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 56802 | 0.69 | 0.50718 |
Target: 5'- -aAgGC-CGACGUCgAGCGGCUgGAg -3' miRNA: 3'- aaUgCGuGCUGCAGgUCGUCGAgCUg -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 47406 | 0.69 | 0.50718 |
Target: 5'- ---aGCGCGACGcgCagaaaAGCaAGCUCGACg -3' miRNA: 3'- aaugCGUGCUGCa-Gg----UCG-UCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 10589 | 0.69 | 0.50718 |
Target: 5'- -aGCaGCGCGGCG-CgAGCGGCUuCGAUg -3' miRNA: 3'- aaUG-CGUGCUGCaGgUCGUCGA-GCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 53457 | 0.69 | 0.504057 |
Target: 5'- -gGCGCcggcgucgaggacaACGGCGUgaAGUGGCUCGGCa -3' miRNA: 3'- aaUGCG--------------UGCUGCAggUCGUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 4557 | 0.69 | 0.496802 |
Target: 5'- -cGCGCGCGGCGcaucucgcgCCAGCGGCggCGcuGCu -3' miRNA: 3'- aaUGCGUGCUGCa--------GGUCGUCGa-GC--UG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 34754 | 0.69 | 0.48652 |
Target: 5'- --gUGCGCGuCGUgCCGGCgccgcucgAGCUCGGCg -3' miRNA: 3'- aauGCGUGCuGCA-GGUCG--------UCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 2491 | 0.69 | 0.48652 |
Target: 5'- -cGCGCuuGGCGaCCAGCAGCaaccCGAUa -3' miRNA: 3'- aaUGCGugCUGCaGGUCGUCGa---GCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 32921 | 0.7 | 0.466267 |
Target: 5'- -cACGCGCGACGcucCCAGCGccuucacgaucGCUcCGACc -3' miRNA: 3'- aaUGCGUGCUGCa--GGUCGU-----------CGA-GCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 44780 | 0.7 | 0.466267 |
Target: 5'- -aGCGCGCGGCaggCCG--AGCUCGACg -3' miRNA: 3'- aaUGCGUGCUGca-GGUcgUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 42316 | 0.7 | 0.466267 |
Target: 5'- gUACGCAUGGCcgaugccCCAGCAGUagCGGCa -3' miRNA: 3'- aAUGCGUGCUGca-----GGUCGUCGa-GCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 46374 | 0.7 | 0.466267 |
Target: 5'- -aGCGCAgGuCGUCCAGCGuggcgcccagcGuCUCGGCa -3' miRNA: 3'- aaUGCGUgCuGCAGGUCGU-----------C-GAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 17606 | 0.7 | 0.456306 |
Target: 5'- -aGCGCGCGgagcuggaGCG-CCAGCAGCgCGAg -3' miRNA: 3'- aaUGCGUGC--------UGCaGGUCGUCGaGCUg -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 28836 | 0.7 | 0.44646 |
Target: 5'- -cGCGCucgauccaGAUGaUCCAGCAGgUCGGCg -3' miRNA: 3'- aaUGCGug------CUGC-AGGUCGUCgAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 2015 | 0.7 | 0.44646 |
Target: 5'- -cACGcCACGGCGcugcuUCguGCuGCUCGACg -3' miRNA: 3'- aaUGC-GUGCUGC-----AGguCGuCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 49187 | 0.7 | 0.427131 |
Target: 5'- -cGCGCACGGCGaugaucUCCGGCAuGCU-GGCc -3' miRNA: 3'- aaUGCGUGCUGC------AGGUCGU-CGAgCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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