miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 8319 0.67 0.625859
Target:  5'- -gACGguCGACGcCCAGCucCUCGAa -3'
miRNA:   3'- aaUGCguGCUGCaGGUCGucGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 8897 0.67 0.658827
Target:  5'- --cCGCACGACgGUCCgcucuuGGguGCgCGGCg -3'
miRNA:   3'- aauGCGUGCUG-CAGG------UCguCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 9478 0.71 0.39909
Target:  5'- -aGCGCgucgAUGACGUCCuGGCGGCUCa-- -3'
miRNA:   3'- aaUGCG----UGCUGCAGG-UCGUCGAGcug -5'
23926 5' -55.8 NC_005262.1 + 10505 0.68 0.592938
Target:  5'- ---aGCAUGGCGgCCAGCAGCagcgCGGg -3'
miRNA:   3'- aaugCGUGCUGCaGGUCGUCGa---GCUg -5'
23926 5' -55.8 NC_005262.1 + 10589 0.69 0.50718
Target:  5'- -aGCaGCGCGGCG-CgAGCGGCUuCGAUg -3'
miRNA:   3'- aaUG-CGUGCUGCaGgUCGUCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 11084 0.66 0.669781
Target:  5'- -aGCaGCGCGGCcucGUCCGGCgucGGC-CGGCg -3'
miRNA:   3'- aaUG-CGUGCUG---CAGGUCG---UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 11379 0.78 0.14677
Target:  5'- -aGCGCACGACGUUCGcgcGCGGCUCcACg -3'
miRNA:   3'- aaUGCGUGCUGCAGGU---CGUCGAGcUG- -5'
23926 5' -55.8 NC_005262.1 + 11578 0.71 0.417654
Target:  5'- cUAUGCcgGCGGCGgCCAGC-GCUCGAg -3'
miRNA:   3'- aAUGCG--UGCUGCaGGUCGuCGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 11901 0.68 0.538838
Target:  5'- -aGCGguCGGugcCGUUCGGCGGCgUCGGCu -3'
miRNA:   3'- aaUGCguGCU---GCAGGUCGUCG-AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 12279 0.68 0.549543
Target:  5'- gUUGCGCACGGuCGUCUcgccguuGCGGC-CGAUc -3'
miRNA:   3'- -AAUGCGUGCU-GCAGGu------CGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 14054 0.68 0.592938
Target:  5'- -gGCGCcgcCGGCGUCgGuGCGGCUuCGGCc -3'
miRNA:   3'- aaUGCGu--GCUGCAGgU-CGUCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 14357 0.67 0.614867
Target:  5'- cUUGCGCGCGuCGaCUGGCGGCggUGAUa -3'
miRNA:   3'- -AAUGCGUGCuGCaGGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 14937 0.77 0.1638
Target:  5'- gUUGCGCGgGguGCGUCCAGCGG-UCGACa -3'
miRNA:   3'- -AAUGCGUgC--UGCAGGUCGUCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 15105 0.75 0.238037
Target:  5'- cUGCgGCGCGGCGUCCGGCuggaacgcgcuGGC-CGGCa -3'
miRNA:   3'- aAUG-CGUGCUGCAGGUCG-----------UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 15713 0.73 0.314568
Target:  5'- -cGCGCGuCGGCGcCgGGCGGCUCGuCg -3'
miRNA:   3'- aaUGCGU-GCUGCaGgUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 15827 0.67 0.644552
Target:  5'- -cGCGCuCG-CGaUCCAGCAGUacgugaugcggcacUCGACg -3'
miRNA:   3'- aaUGCGuGCuGC-AGGUCGUCG--------------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 17066 0.68 0.571142
Target:  5'- -cGCGCACGGCG-CCgauaGGCGcGCccgUCGACg -3'
miRNA:   3'- aaUGCGUGCUGCaGG----UCGU-CG---AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 17499 0.73 0.322379
Target:  5'- -cGCGCGCGACGcgucgaUCGGCAGCcUGACg -3'
miRNA:   3'- aaUGCGUGCUGCa-----GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 17550 0.68 0.571142
Target:  5'- -cGCGCGCGAgG--CGGCAGCcgCGGCg -3'
miRNA:   3'- aaUGCGUGCUgCagGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 17606 0.7 0.456306
Target:  5'- -aGCGCGCGgagcuggaGCG-CCAGCAGCgCGAg -3'
miRNA:   3'- aaUGCGUGC--------UGCaGGUCGUCGaGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.