miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 17760 0.68 0.571142
Target:  5'- -cGCGCAUGACuUCgUAGUAGCgCGGCa -3'
miRNA:   3'- aaUGCGUGCUGcAG-GUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 18118 0.72 0.355061
Target:  5'- aUGCGCACGAaGUgCGGCAccaugcGCUCGAUc -3'
miRNA:   3'- aAUGCGUGCUgCAgGUCGU------CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 19622 0.68 0.582019
Target:  5'- -gGCGguCGGCGUCCAGCc---CGGCa -3'
miRNA:   3'- aaUGCguGCUGCAGGUCGucgaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 20316 0.68 0.591845
Target:  5'- -cGCGUA-GACGgucgCCgccacgaAGCGGCUCGACu -3'
miRNA:   3'- aaUGCGUgCUGCa---GG-------UCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 20725 0.72 0.338433
Target:  5'- -cACGguCG-CGUCgcuCGGCAGCUCGACc -3'
miRNA:   3'- aaUGCguGCuGCAG---GUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 20744 0.66 0.691571
Target:  5'- -gGCGCGCGGUG-CCGGCcGGgUCGAUg -3'
miRNA:   3'- aaUGCGUGCUGCaGGUCG-UCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 21327 0.68 0.549543
Target:  5'- cUACGCGC-ACGUCCAGgaGGCgaUCGAg -3'
miRNA:   3'- aAUGCGUGcUGCAGGUCg-UCG--AGCUg -5'
23926 5' -55.8 NC_005262.1 + 22691 0.72 0.372256
Target:  5'- -cGCGCAcgaucuCGACGUggCCGGCGGCgUUGACg -3'
miRNA:   3'- aaUGCGU------GCUGCA--GGUCGUCG-AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 23923 0.72 0.345845
Target:  5'- -gGCGUuCGGCaaggcguuucuggGUCCAGCaAGCUCGGCg -3'
miRNA:   3'- aaUGCGuGCUG-------------CAGGUCG-UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 25355 0.66 0.702386
Target:  5'- -aGCGUGcCGuCGUCCGGCGugauCUCGACc -3'
miRNA:   3'- aaUGCGU-GCuGCAGGUCGUc---GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 25535 0.71 0.39909
Target:  5'- -cGCGuCGCGACGUCCgugcgcGGCGGCaCGAUc -3'
miRNA:   3'- aaUGC-GUGCUGCAGG------UCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 26025 0.75 0.220059
Target:  5'- -cACGUACuACGcCCAGCAGCUCGcCg -3'
miRNA:   3'- aaUGCGUGcUGCaGGUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 26412 0.71 0.417654
Target:  5'- -gACGCGCGACGcguUCCcGCugcucuGGUUCGACg -3'
miRNA:   3'- aaUGCGUGCUGC---AGGuCG------UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 27060 0.67 0.614867
Target:  5'- -cACGCGCuacGCGUUCGuGCgcgAGCUCGGCg -3'
miRNA:   3'- aaUGCGUGc--UGCAGGU-CG---UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 28161 0.72 0.372256
Target:  5'- -aGCGCGCGGCGcaacugcgCgCGGCGGCcgUCGACa -3'
miRNA:   3'- aaUGCGUGCUGCa-------G-GUCGUCG--AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 28836 0.7 0.44646
Target:  5'- -cGCGCucgauccaGAUGaUCCAGCAGgUCGGCg -3'
miRNA:   3'- aaUGCGug------CUGC-AGGUCGUCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 28890 0.68 0.582019
Target:  5'- -gACGCACGACGaacgcagugUCCGGCgucgcgauccaGGCaCGGCa -3'
miRNA:   3'- aaUGCGUGCUGC---------AGGUCG-----------UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 28961 0.66 0.680699
Target:  5'- -cGCGCGCGAggaaGUCgGGgAGCugaUCGGCa -3'
miRNA:   3'- aaUGCGUGCUg---CAGgUCgUCG---AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 28975 0.67 0.625859
Target:  5'- cUGCGCcuCGcCuUCCAGCAGCaCGGCg -3'
miRNA:   3'- aAUGCGu-GCuGcAGGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 29724 0.69 0.51765
Target:  5'- -cGCGCGCGGCGUgCCAGUccgGGUUCu-- -3'
miRNA:   3'- aaUGCGUGCUGCA-GGUCG---UCGAGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.