miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 29818 1.08 0.00111
Target:  5'- gUUACGCACGACGUCCAGCAGCUCGACg -3'
miRNA:   3'- -AAUGCGUGCUGCAGGUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 30518 0.67 0.647849
Target:  5'- gUGCGCGCGAUGcgguacgCCucGCGGaUCGACa -3'
miRNA:   3'- aAUGCGUGCUGCa------GGu-CGUCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 30757 0.67 0.658827
Target:  5'- ---aGUACGACGUCgGGCGGUaCGuCa -3'
miRNA:   3'- aaugCGUGCUGCAGgUCGUCGaGCuG- -5'
23926 5' -55.8 NC_005262.1 + 30895 0.71 0.39909
Target:  5'- -cGCGUGCGACGccgCCGGCuuGGC-CGACg -3'
miRNA:   3'- aaUGCGUGCUGCa--GGUCG--UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 31880 0.66 0.669781
Target:  5'- --gUGguCGACGUCCGGC-GCgUCGAg -3'
miRNA:   3'- aauGCguGCUGCAGGUCGuCG-AGCUg -5'
23926 5' -55.8 NC_005262.1 + 31921 0.66 0.701308
Target:  5'- -gACGCGCcgGACGUCgccaccugcuguaCGGCGGUguggCGACg -3'
miRNA:   3'- aaUGCGUG--CUGCAG-------------GUCGUCGa---GCUG- -5'
23926 5' -55.8 NC_005262.1 + 32742 0.66 0.680699
Target:  5'- -aGCGCGuCGGCGUcggucagcaCCAGCAggcgguacuuccGCUCGAa -3'
miRNA:   3'- aaUGCGU-GCUGCA---------GGUCGU------------CGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 32921 0.7 0.466267
Target:  5'- -cACGCGCGACGcucCCAGCGccuucacgaucGCUcCGACc -3'
miRNA:   3'- aaUGCGUGCUGCa--GGUCGU-----------CGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 33161 0.67 0.614867
Target:  5'- -gACGCGgGcaccuugccgaGCGUCggCGGCGGCUCGAUc -3'
miRNA:   3'- aaUGCGUgC-----------UGCAG--GUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 33662 0.71 0.408306
Target:  5'- -gGCGCuuCGGCGaCCAGCAGCggcaCGAUc -3'
miRNA:   3'- aaUGCGu-GCUGCaGGUCGUCGa---GCUG- -5'
23926 5' -55.8 NC_005262.1 + 33880 0.67 0.613769
Target:  5'- -cGCGCGCGAgacgaucgugcguCGgCCGGCGGCcCGAUc -3'
miRNA:   3'- aaUGCGUGCU-------------GCaGGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 33957 0.68 0.592938
Target:  5'- -aGCGaucccggaaCGCGGCGUCgAGCuGCUgGACg -3'
miRNA:   3'- aaUGC---------GUGCUGCAGgUCGuCGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 34036 0.68 0.560314
Target:  5'- gUGCGcCGCGuCGaUCGGCAguuGCUCGACg -3'
miRNA:   3'- aAUGC-GUGCuGCaGGUCGU---CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 34754 0.69 0.48652
Target:  5'- --gUGCGCGuCGUgCCGGCgccgcucgAGCUCGGCg -3'
miRNA:   3'- aauGCGUGCuGCA-GGUCG--------UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 35078 0.66 0.702386
Target:  5'- -gGCGCGCGGCcUCgCGGCGGaaCUCGuCg -3'
miRNA:   3'- aaUGCGUGCUGcAG-GUCGUC--GAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 35236 0.67 0.636856
Target:  5'- -gGCgGCGCGAuCGg-CAGCGGCUgGGCg -3'
miRNA:   3'- aaUG-CGUGCU-GCagGUCGUCGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 35781 0.73 0.322379
Target:  5'- -cGCGCGCGAgCGUUCGacuuCAGCUCGAUa -3'
miRNA:   3'- aaUGCGUGCU-GCAGGUc---GUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 36237 0.67 0.65773
Target:  5'- -cGCuGCGCGGCGUCCucgccggGGCugAGCUCGcCc -3'
miRNA:   3'- aaUG-CGUGCUGCAGG-------UCG--UCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 37518 0.71 0.390009
Target:  5'- -gACGCACGugGUCCGcgucguGCGGCagGAa -3'
miRNA:   3'- aaUGCGUGCugCAGGU------CGUCGagCUg -5'
23926 5' -55.8 NC_005262.1 + 37659 0.66 0.669781
Target:  5'- -cGCGCAUGAucuaCGUUCAaggaucgggcguGCAGCUCGuCg -3'
miRNA:   3'- aaUGCGUGCU----GCAGGU------------CGUCGAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.