miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 63283 0.67 0.614867
Target:  5'- --cUGCuuGACGgCCGGCugcuGGCUCGGCg -3'
miRNA:   3'- aauGCGugCUGCaGGUCG----UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 62825 0.69 0.50718
Target:  5'- -gACGUGcCGACGaUCGGCcacGGCUCGACg -3'
miRNA:   3'- aaUGCGU-GCUGCaGGUCG---UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 62738 0.66 0.702386
Target:  5'- -gGCGCGCuGGCGgucagcgCC-GCAGCauUCGGCa -3'
miRNA:   3'- aaUGCGUG-CUGCa------GGuCGUCG--AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 61764 0.68 0.549543
Target:  5'- cUACGCGCccCGUCgAGCAGCaCGAa -3'
miRNA:   3'- aAUGCGUGcuGCAGgUCGUCGaGCUg -5'
23926 5' -55.8 NC_005262.1 + 60559 0.71 0.381063
Target:  5'- -cACGC-UGACG-CCGGC-GCUCGGCg -3'
miRNA:   3'- aaUGCGuGCUGCaGGUCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 59402 0.68 0.549543
Target:  5'- -gGCGCGCGACaUCgCAcGCGcaacGCUCGACc -3'
miRNA:   3'- aaUGCGUGCUGcAG-GU-CGU----CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 58903 0.67 0.603891
Target:  5'- -cGCuGCGCGAUcaggCCGGCGGCcCGACc -3'
miRNA:   3'- aaUG-CGUGCUGca--GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 57562 0.78 0.14677
Target:  5'- gUGCGCGCGGCGggcUUCAGCAuCUCGGCg -3'
miRNA:   3'- aAUGCGUGCUGC---AGGUCGUcGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 56834 0.68 0.592938
Target:  5'- cUACGCgcaccACGACGaCCAGaacaAGCUcCGGCg -3'
miRNA:   3'- aAUGCG-----UGCUGCaGGUCg---UCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 56802 0.69 0.50718
Target:  5'- -aAgGC-CGACGUCgAGCGGCUgGAg -3'
miRNA:   3'- aaUgCGuGCUGCAGgUCGUCGAgCUg -5'
23926 5' -55.8 NC_005262.1 + 56607 0.66 0.713133
Target:  5'- -cGCGCguggGCGACGaagGGCAGCUaCGACu -3'
miRNA:   3'- aaUGCG----UGCUGCaggUCGUCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 55269 0.72 0.330334
Target:  5'- -cACGCAcuCGGCGUUCGGCcGCaUCGGCa -3'
miRNA:   3'- aaUGCGU--GCUGCAGGUCGuCG-AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 54812 0.69 0.528204
Target:  5'- aUGCGCGCGGCGUUUAGCcgauggauuuGGaC-CGACa -3'
miRNA:   3'- aAUGCGUGCUGCAGGUCG----------UC-GaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 54583 0.66 0.706694
Target:  5'- -gGCGCugaacgagaagauCGACGUCagcuacaacucGCGGCUCGGCu -3'
miRNA:   3'- aaUGCGu------------GCUGCAGgu---------CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 53915 0.69 0.528204
Target:  5'- --cUGCGCGACGcgCUGaagcaggcGCAGCUCGACc -3'
miRNA:   3'- aauGCGUGCUGCa-GGU--------CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 53457 0.69 0.504057
Target:  5'- -gGCGCcggcgucgaggacaACGGCGUgaAGUGGCUCGGCa -3'
miRNA:   3'- aaUGCG--------------UGCUGCAggUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 53115 0.66 0.691571
Target:  5'- cUGCGCAUGcaggauGCGUUCGGCcuGCUCGuuuGCg -3'
miRNA:   3'- aAUGCGUGC------UGCAGGUCGu-CGAGC---UG- -5'
23926 5' -55.8 NC_005262.1 + 52984 0.75 0.244297
Target:  5'- aUGCGCugGucgugauCGUCgCGGCAGCUCGcGCa -3'
miRNA:   3'- aAUGCGugCu------GCAG-GUCGUCGAGC-UG- -5'
23926 5' -55.8 NC_005262.1 + 52880 0.68 0.550617
Target:  5'- -aGCGCACGACGcagucgcgcacuacaCCAGCGagggcgugauccGCUCGAUc -3'
miRNA:   3'- aaUGCGUGCUGCa--------------GGUCGU------------CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52612 0.69 0.50718
Target:  5'- -cGCGCACGAUca-CGGCGGCgucgUCGGCg -3'
miRNA:   3'- aaUGCGUGCUGcagGUCGUCG----AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.