miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 52556 0.67 0.658827
Target:  5'- gUGCGCagcGCGAuCGUCgCuGUcgAGCUCGGCg -3'
miRNA:   3'- aAUGCG---UGCU-GCAG-GuCG--UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52421 0.67 0.624759
Target:  5'- -cGCGCGCGaACGUCguGC-GCuucaucgUCGACg -3'
miRNA:   3'- aaUGCGUGC-UGCAGguCGuCG-------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52362 0.68 0.560314
Target:  5'- -cGgGCGCGGCGUgucgcgcaccuUCGGCGGCcCGGCg -3'
miRNA:   3'- aaUgCGUGCUGCA-----------GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52122 0.67 0.647849
Target:  5'- gUUGCGCGCGAagcucugcCGgCCAgcguGCAGCgCGACg -3'
miRNA:   3'- -AAUGCGUGCU--------GCaGGU----CGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52081 0.66 0.702386
Target:  5'- aUGCGCAacaccUGAag--CAGCAGCUCGGCc -3'
miRNA:   3'- aAUGCGU-----GCUgcagGUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 51447 0.66 0.680699
Target:  5'- --cCGuCACGACGUCC-GCAGacaUCGGa -3'
miRNA:   3'- aauGC-GUGCUGCAGGuCGUCg--AGCUg -5'
23926 5' -55.8 NC_005262.1 + 51331 0.75 0.234346
Target:  5'- -cGCGCGCGGCaagaucgaauccgCCAuGCAGCUCGGCa -3'
miRNA:   3'- aaUGCGUGCUGca-----------GGU-CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 51221 0.74 0.257227
Target:  5'- --uCGC-CGGCGgcagCAGCAGCUCGACg -3'
miRNA:   3'- aauGCGuGCUGCag--GUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 50918 0.75 0.238037
Target:  5'- aUGCGCACGAgCGUCaccgugcacggCAGCgcgaAGCUCGGCa -3'
miRNA:   3'- aAUGCGUGCU-GCAG-----------GUCG----UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 50663 0.66 0.700229
Target:  5'- -cGCGCGCGGCGgaccuaauugugCCA-CGGUUCGAa -3'
miRNA:   3'- aaUGCGUGCUGCa-----------GGUcGUCGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 49187 0.7 0.427131
Target:  5'- -cGCGCACGGCGaugaucUCCGGCAuGCU-GGCc -3'
miRNA:   3'- aaUGCGUGCUGC------AGGUCGU-CGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 48494 0.68 0.583109
Target:  5'- -gGCgGCGCGACGgcagccgcagguaaCAGCGcGCUCGACc -3'
miRNA:   3'- aaUG-CGUGCUGCag------------GUCGU-CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 48100 0.66 0.713133
Target:  5'- -gACGCGCGAUGaugugacgcgCCGcGCgcaagAGCUCGGCg -3'
miRNA:   3'- aaUGCGUGCUGCa---------GGU-CG-----UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 47406 0.69 0.50718
Target:  5'- ---aGCGCGACGcgCagaaaAGCaAGCUCGACg -3'
miRNA:   3'- aaugCGUGCUGCa-Gg----UCG-UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 47380 0.68 0.582019
Target:  5'- cUUGCGCcucGCGGCGcagaaucCCGGCGGC-CGGCc -3'
miRNA:   3'- -AAUGCG---UGCUGCa------GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 46635 0.66 0.702386
Target:  5'- -cGCGCGCGGCcuugCCGGCcuuCUCGAUu -3'
miRNA:   3'- aaUGCGUGCUGca--GGUCGuc-GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 46374 0.7 0.466267
Target:  5'- -aGCGCAgGuCGUCCAGCGuggcgcccagcGuCUCGGCa -3'
miRNA:   3'- aaUGCGUgCuGCAGGUCGU-----------C-GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 46321 0.66 0.680699
Target:  5'- -gGCGCGCGcuuCGUCCuGgAaCUCGGCg -3'
miRNA:   3'- aaUGCGUGCu--GCAGGuCgUcGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 46144 0.68 0.582019
Target:  5'- -gGCGCGCuGGCGggcgaucucugCCuGCuGCUCGGCg -3'
miRNA:   3'- aaUGCGUG-CUGCa----------GGuCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 45878 0.67 0.625859
Target:  5'- gUugGCGuCGGCGccgaUCGGCGGCUCGcCg -3'
miRNA:   3'- aAugCGU-GCUGCa---GGUCGUCGAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.