miRNA display CGI


Results 41 - 60 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 45695 0.72 0.330334
Target:  5'- gUGCGCAuCGAgGgCCGGCAGC-CGGCc -3'
miRNA:   3'- aAUGCGU-GCUgCaGGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 44980 0.66 0.691571
Target:  5'- -aGgGC-CGACGUgCAGCAGUccgcgCGGCa -3'
miRNA:   3'- aaUgCGuGCUGCAgGUCGUCGa----GCUG- -5'
23926 5' -55.8 NC_005262.1 + 44780 0.7 0.466267
Target:  5'- -aGCGCGCGGCaggCCG--AGCUCGACg -3'
miRNA:   3'- aaUGCGUGCUGca-GGUcgUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 44713 0.71 0.381063
Target:  5'- -cGCGCGCGAgGaaauGCAGCUCGGCc -3'
miRNA:   3'- aaUGCGUGCUgCagguCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 44157 0.66 0.680699
Target:  5'- -cGCGCGCGAuCGggCAGgAGCgCGGCg -3'
miRNA:   3'- aaUGCGUGCU-GCagGUCgUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 43916 0.67 0.614867
Target:  5'- ---aGCGCGGCG-CCAaccGCGGC-CGACu -3'
miRNA:   3'- aaugCGUGCUGCaGGU---CGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 43846 0.8 0.111047
Target:  5'- -cGCGCGCGGCGgugcgCCGGCAGgacCUCGGCg -3'
miRNA:   3'- aaUGCGUGCUGCa----GGUCGUC---GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 42316 0.7 0.466267
Target:  5'- gUACGCAUGGCcgaugccCCAGCAGUagCGGCa -3'
miRNA:   3'- aAUGCGUGCUGca-----GGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 42100 0.66 0.691571
Target:  5'- cUGCGUGCccGCGUaCAGCAGCgCGGCg -3'
miRNA:   3'- aAUGCGUGc-UGCAgGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 41610 0.66 0.669781
Target:  5'- -gGCGUucuCGGCuUCCAGCuuCUCGACc -3'
miRNA:   3'- aaUGCGu--GCUGcAGGUCGucGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 40350 0.68 0.592938
Target:  5'- -cGCGCAUG-CG-CCAGUcgucggacGGCUCGAUg -3'
miRNA:   3'- aaUGCGUGCuGCaGGUCG--------UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 39834 0.75 0.220059
Target:  5'- aUGCGCGCGA--UCCAGCAGUugagcagugaagUCGACg -3'
miRNA:   3'- aAUGCGUGCUgcAGGUCGUCG------------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 39144 0.67 0.625859
Target:  5'- -gACGCugGCGACGUagcugUCAGCGGUUCG-Cu -3'
miRNA:   3'- aaUGCG--UGCUGCA-----GGUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 38970 0.66 0.713133
Target:  5'- ---gGCACGGCG-CCGGCcgcgaucgcgAGCUCGcGCu -3'
miRNA:   3'- aaugCGUGCUGCaGGUCG----------UCGAGC-UG- -5'
23926 5' -55.8 NC_005262.1 + 37881 0.71 0.39909
Target:  5'- -cGCGCgugGCGACGUaCCAugcgcGCuGCUCGGCa -3'
miRNA:   3'- aaUGCG---UGCUGCA-GGU-----CGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 37659 0.66 0.669781
Target:  5'- -cGCGCAUGAucuaCGUUCAaggaucgggcguGCAGCUCGuCg -3'
miRNA:   3'- aaUGCGUGCU----GCAGGU------------CGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 37518 0.71 0.390009
Target:  5'- -gACGCACGugGUCCGcgucguGCGGCagGAa -3'
miRNA:   3'- aaUGCGUGCugCAGGU------CGUCGagCUg -5'
23926 5' -55.8 NC_005262.1 + 36237 0.67 0.65773
Target:  5'- -cGCuGCGCGGCGUCCucgccggGGCugAGCUCGcCc -3'
miRNA:   3'- aaUG-CGUGCUGCAGG-------UCG--UCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 35781 0.73 0.322379
Target:  5'- -cGCGCGCGAgCGUUCGacuuCAGCUCGAUa -3'
miRNA:   3'- aaUGCGUGCU-GCAGGUc---GUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 35236 0.67 0.636856
Target:  5'- -gGCgGCGCGAuCGg-CAGCGGCUgGGCg -3'
miRNA:   3'- aaUG-CGUGCU-GCagGUCGUCGAgCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.