miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 2015 0.7 0.44646
Target:  5'- -cACGcCACGGCGcugcuUCguGCuGCUCGACg -3'
miRNA:   3'- aaUGC-GUGCUGC-----AGguCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 5130 0.71 0.381063
Target:  5'- -cAUGCGCGACGggCGGCGcugauccuGCUCGGCg -3'
miRNA:   3'- aaUGCGUGCUGCagGUCGU--------CGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 44713 0.71 0.381063
Target:  5'- -cGCGCGCGAgGaaauGCAGCUCGGCc -3'
miRNA:   3'- aaUGCGUGCUgCagguCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 60559 0.71 0.381063
Target:  5'- -cACGC-UGACG-CCGGC-GCUCGGCg -3'
miRNA:   3'- aaUGCGuGCUGCaGGUCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 25535 0.71 0.39909
Target:  5'- -cGCGuCGCGACGUCCgugcgcGGCGGCaCGAUc -3'
miRNA:   3'- aaUGC-GUGCUGCAGG------UCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 6252 0.71 0.41203
Target:  5'- -cGCGCAcggucuuugccgccuCGAUGauggUCAGCAGCUCGGCc -3'
miRNA:   3'- aaUGCGU---------------GCUGCa---GGUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 26412 0.71 0.417654
Target:  5'- -gACGCGCGACGcguUCCcGCugcucuGGUUCGACg -3'
miRNA:   3'- aaUGCGUGCUGC---AGGuCG------UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 11578 0.71 0.417654
Target:  5'- cUAUGCcgGCGGCGgCCAGC-GCUCGAg -3'
miRNA:   3'- aAUGCG--UGCUGCaGGUCGuCGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 49187 0.7 0.427131
Target:  5'- -cGCGCACGGCGaugaucUCCGGCAuGCU-GGCc -3'
miRNA:   3'- aaUGCGUGCUGC------AGGUCGU-CGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 28161 0.72 0.372256
Target:  5'- -aGCGCGCGGCGcaacugcgCgCGGCGGCcgUCGACa -3'
miRNA:   3'- aaUGCGUGCUGCa-------G-GUCGUCG--AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 23923 0.72 0.345845
Target:  5'- -gGCGUuCGGCaaggcguuucuggGUCCAGCaAGCUCGGCg -3'
miRNA:   3'- aaUGCGuGCUG-------------CAGGUCG-UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 20725 0.72 0.338433
Target:  5'- -cACGguCG-CGUCgcuCGGCAGCUCGACc -3'
miRNA:   3'- aaUGCguGCuGCAG---GUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 11379 0.78 0.14677
Target:  5'- -aGCGCACGACGUUCGcgcGCGGCUCcACg -3'
miRNA:   3'- aaUGCGUGCUGCAGGU---CGUCGAGcUG- -5'
23926 5' -55.8 NC_005262.1 + 26025 0.75 0.220059
Target:  5'- -cACGUACuACGcCCAGCAGCUCGcCg -3'
miRNA:   3'- aaUGCGUGcUGCaGGUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 39834 0.75 0.220059
Target:  5'- aUGCGCGCGA--UCCAGCAGUugagcagugaagUCGACg -3'
miRNA:   3'- aAUGCGUGCUgcAGGUCGUCG------------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 51331 0.75 0.234346
Target:  5'- -cGCGCGCGGCaagaucgaauccgCCAuGCAGCUCGGCa -3'
miRNA:   3'- aaUGCGUGCUGca-----------GGU-CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 17499 0.73 0.322379
Target:  5'- -cGCGCGCGACGcgucgaUCGGCAGCcUGACg -3'
miRNA:   3'- aaUGCGUGCUGCa-----GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 35781 0.73 0.322379
Target:  5'- -cGCGCGCGAgCGUUCGacuuCAGCUCGAUa -3'
miRNA:   3'- aaUGCGUGCU-GCAGGUc---GUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 45695 0.72 0.330334
Target:  5'- gUGCGCAuCGAgGgCCGGCAGC-CGGCc -3'
miRNA:   3'- aAUGCGU-GCUgCaGGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 55269 0.72 0.330334
Target:  5'- -cACGCAcuCGGCGUUCGGCcGCaUCGGCa -3'
miRNA:   3'- aaUGCGU--GCUGCAGGUCGuCG-AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.