Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23926 | 5' | -55.8 | NC_005262.1 | + | 2015 | 0.7 | 0.44646 |
Target: 5'- -cACGcCACGGCGcugcuUCguGCuGCUCGACg -3' miRNA: 3'- aaUGC-GUGCUGC-----AGguCGuCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 49187 | 0.7 | 0.427131 |
Target: 5'- -cGCGCACGGCGaugaucUCCGGCAuGCU-GGCc -3' miRNA: 3'- aaUGCGUGCUGC------AGGUCGU-CGAgCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 55269 | 0.72 | 0.330334 |
Target: 5'- -cACGCAcuCGGCGUUCGGCcGCaUCGGCa -3' miRNA: 3'- aaUGCGU--GCUGCAGGUCGuCG-AGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 45695 | 0.72 | 0.330334 |
Target: 5'- gUGCGCAuCGAgGgCCGGCAGC-CGGCc -3' miRNA: 3'- aAUGCGU-GCUgCaGGUCGUCGaGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 35781 | 0.73 | 0.322379 |
Target: 5'- -cGCGCGCGAgCGUUCGacuuCAGCUCGAUa -3' miRNA: 3'- aaUGCGUGCU-GCAGGUc---GUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 17499 | 0.73 | 0.322379 |
Target: 5'- -cGCGCGCGACGcgucgaUCGGCAGCcUGACg -3' miRNA: 3'- aaUGCGUGCUGCa-----GGUCGUCGaGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 51331 | 0.75 | 0.234346 |
Target: 5'- -cGCGCGCGGCaagaucgaauccgCCAuGCAGCUCGGCa -3' miRNA: 3'- aaUGCGUGCUGca-----------GGU-CGUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 39834 | 0.75 | 0.220059 |
Target: 5'- aUGCGCGCGA--UCCAGCAGUugagcagugaagUCGACg -3' miRNA: 3'- aAUGCGUGCUgcAGGUCGUCG------------AGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 26025 | 0.75 | 0.220059 |
Target: 5'- -cACGUACuACGcCCAGCAGCUCGcCg -3' miRNA: 3'- aaUGCGUGcUGCaGGUCGUCGAGCuG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 11379 | 0.78 | 0.14677 |
Target: 5'- -aGCGCACGACGUUCGcgcGCGGCUCcACg -3' miRNA: 3'- aaUGCGUGCUGCAGGU---CGUCGAGcUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 20725 | 0.72 | 0.338433 |
Target: 5'- -cACGguCG-CGUCgcuCGGCAGCUCGACc -3' miRNA: 3'- aaUGCguGCuGCAG---GUCGUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 23923 | 0.72 | 0.345845 |
Target: 5'- -gGCGUuCGGCaaggcguuucuggGUCCAGCaAGCUCGGCg -3' miRNA: 3'- aaUGCGuGCUG-------------CAGGUCG-UCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 11578 | 0.71 | 0.417654 |
Target: 5'- cUAUGCcgGCGGCGgCCAGC-GCUCGAg -3' miRNA: 3'- aAUGCG--UGCUGCaGGUCGuCGAGCUg -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 26412 | 0.71 | 0.417654 |
Target: 5'- -gACGCGCGACGcguUCCcGCugcucuGGUUCGACg -3' miRNA: 3'- aaUGCGUGCUGC---AGGuCG------UCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 6252 | 0.71 | 0.41203 |
Target: 5'- -cGCGCAcggucuuugccgccuCGAUGauggUCAGCAGCUCGGCc -3' miRNA: 3'- aaUGCGU---------------GCUGCa---GGUCGUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 25535 | 0.71 | 0.39909 |
Target: 5'- -cGCGuCGCGACGUCCgugcgcGGCGGCaCGAUc -3' miRNA: 3'- aaUGC-GUGCUGCAGG------UCGUCGaGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 60559 | 0.71 | 0.381063 |
Target: 5'- -cACGC-UGACG-CCGGC-GCUCGGCg -3' miRNA: 3'- aaUGCGuGCUGCaGGUCGuCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 44713 | 0.71 | 0.381063 |
Target: 5'- -cGCGCGCGAgGaaauGCAGCUCGGCc -3' miRNA: 3'- aaUGCGUGCUgCagguCGUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 5130 | 0.71 | 0.381063 |
Target: 5'- -cAUGCGCGACGggCGGCGcugauccuGCUCGGCg -3' miRNA: 3'- aaUGCGUGCUGCagGUCGU--------CGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 28161 | 0.72 | 0.372256 |
Target: 5'- -aGCGCGCGGCGcaacugcgCgCGGCGGCcgUCGACa -3' miRNA: 3'- aaUGCGUGCUGCa-------G-GUCGUCG--AGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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