miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 17499 0.73 0.322379
Target:  5'- -cGCGCGCGACGcgucgaUCGGCAGCcUGACg -3'
miRNA:   3'- aaUGCGUGCUGCa-----GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 51331 0.75 0.234346
Target:  5'- -cGCGCGCGGCaagaucgaauccgCCAuGCAGCUCGGCa -3'
miRNA:   3'- aaUGCGUGCUGca-----------GGU-CGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 39834 0.75 0.220059
Target:  5'- aUGCGCGCGA--UCCAGCAGUugagcagugaagUCGACg -3'
miRNA:   3'- aAUGCGUGCUgcAGGUCGUCG------------AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 26025 0.75 0.220059
Target:  5'- -cACGUACuACGcCCAGCAGCUCGcCg -3'
miRNA:   3'- aaUGCGUGcUGCaGGUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 11379 0.78 0.14677
Target:  5'- -aGCGCACGACGUUCGcgcGCGGCUCcACg -3'
miRNA:   3'- aaUGCGUGCUGCAGGU---CGUCGAGcUG- -5'
23926 5' -55.8 NC_005262.1 + 60559 0.71 0.381063
Target:  5'- -cACGC-UGACG-CCGGC-GCUCGGCg -3'
miRNA:   3'- aaUGCGuGCUGCaGGUCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 25535 0.71 0.39909
Target:  5'- -cGCGuCGCGACGUCCgugcgcGGCGGCaCGAUc -3'
miRNA:   3'- aaUGC-GUGCUGCAGG------UCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 53457 0.69 0.504057
Target:  5'- -gGCGCcggcgucgaggacaACGGCGUgaAGUGGCUCGGCa -3'
miRNA:   3'- aaUGCG--------------UGCUGCAggUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4557 0.69 0.496802
Target:  5'- -cGCGCGCGGCGcaucucgcgCCAGCGGCggCGcuGCu -3'
miRNA:   3'- aaUGCGUGCUGCa--------GGUCGUCGa-GC--UG- -5'
23926 5' -55.8 NC_005262.1 + 34754 0.69 0.48652
Target:  5'- --gUGCGCGuCGUgCCGGCgccgcucgAGCUCGGCg -3'
miRNA:   3'- aauGCGUGCuGCA-GGUCG--------UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 2491 0.69 0.48652
Target:  5'- -cGCGCuuGGCGaCCAGCAGCaaccCGAUa -3'
miRNA:   3'- aaUGCGugCUGCaGGUCGUCGa---GCUG- -5'
23926 5' -55.8 NC_005262.1 + 44780 0.7 0.466267
Target:  5'- -aGCGCGCGGCaggCCG--AGCUCGACg -3'
miRNA:   3'- aaUGCGUGCUGca-GGUcgUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 32921 0.7 0.466267
Target:  5'- -cACGCGCGACGcucCCAGCGccuucacgaucGCUcCGACc -3'
miRNA:   3'- aaUGCGUGCUGCa--GGUCGU-----------CGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 17606 0.7 0.456306
Target:  5'- -aGCGCGCGgagcuggaGCG-CCAGCAGCgCGAg -3'
miRNA:   3'- aaUGCGUGC--------UGCaGGUCGUCGaGCUg -5'
23926 5' -55.8 NC_005262.1 + 28836 0.7 0.44646
Target:  5'- -cGCGCucgauccaGAUGaUCCAGCAGgUCGGCg -3'
miRNA:   3'- aaUGCGug------CUGC-AGGUCGUCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 2015 0.7 0.44646
Target:  5'- -cACGcCACGGCGcugcuUCguGCuGCUCGACg -3'
miRNA:   3'- aaUGC-GUGCUGC-----AGguCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 49187 0.7 0.427131
Target:  5'- -cGCGCACGGCGaugaucUCCGGCAuGCU-GGCc -3'
miRNA:   3'- aaUGCGUGCUGC------AGGUCGU-CGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 11578 0.71 0.417654
Target:  5'- cUAUGCcgGCGGCGgCCAGC-GCUCGAg -3'
miRNA:   3'- aAUGCG--UGCUGCaGGUCGuCGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 26412 0.71 0.417654
Target:  5'- -gACGCGCGACGcguUCCcGCugcucuGGUUCGACg -3'
miRNA:   3'- aaUGCGUGCUGC---AGGuCG------UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 6252 0.71 0.41203
Target:  5'- -cGCGCAcggucuuugccgccuCGAUGauggUCAGCAGCUCGGCc -3'
miRNA:   3'- aaUGCGU---------------GCUGCa---GGUCGUCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.