miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 56802 0.69 0.50718
Target:  5'- -aAgGC-CGACGUCgAGCGGCUgGAg -3'
miRNA:   3'- aaUgCGuGCUGCAGgUCGUCGAgCUg -5'
23926 5' -55.8 NC_005262.1 + 47406 0.69 0.50718
Target:  5'- ---aGCGCGACGcgCagaaaAGCaAGCUCGACg -3'
miRNA:   3'- aaugCGUGCUGCa-Gg----UCG-UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 10589 0.69 0.50718
Target:  5'- -aGCaGCGCGGCG-CgAGCGGCUuCGAUg -3'
miRNA:   3'- aaUG-CGUGCUGCaGgUCGUCGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 53457 0.69 0.504057
Target:  5'- -gGCGCcggcgucgaggacaACGGCGUgaAGUGGCUCGGCa -3'
miRNA:   3'- aaUGCG--------------UGCUGCAggUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4557 0.69 0.496802
Target:  5'- -cGCGCGCGGCGcaucucgcgCCAGCGGCggCGcuGCu -3'
miRNA:   3'- aaUGCGUGCUGCa--------GGUCGUCGa-GC--UG- -5'
23926 5' -55.8 NC_005262.1 + 34754 0.69 0.48652
Target:  5'- --gUGCGCGuCGUgCCGGCgccgcucgAGCUCGGCg -3'
miRNA:   3'- aauGCGUGCuGCA-GGUCG--------UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 49187 0.7 0.427131
Target:  5'- -cGCGCACGGCGaugaucUCCGGCAuGCU-GGCc -3'
miRNA:   3'- aaUGCGUGCUGC------AGGUCGU-CGAgCUG- -5'
23926 5' -55.8 NC_005262.1 + 2015 0.7 0.44646
Target:  5'- -cACGcCACGGCGcugcuUCguGCuGCUCGACg -3'
miRNA:   3'- aaUGC-GUGCUGC-----AGguCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 28836 0.7 0.44646
Target:  5'- -cGCGCucgauccaGAUGaUCCAGCAGgUCGGCg -3'
miRNA:   3'- aaUGCGug------CUGC-AGGUCGUCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 17606 0.7 0.456306
Target:  5'- -aGCGCGCGgagcuggaGCG-CCAGCAGCgCGAg -3'
miRNA:   3'- aaUGCGUGC--------UGCaGGUCGUCGaGCUg -5'
23926 5' -55.8 NC_005262.1 + 32921 0.7 0.466267
Target:  5'- -cACGCGCGACGcucCCAGCGccuucacgaucGCUcCGACc -3'
miRNA:   3'- aaUGCGUGCUGCa--GGUCGU-----------CGA-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 44780 0.7 0.466267
Target:  5'- -aGCGCGCGGCaggCCG--AGCUCGACg -3'
miRNA:   3'- aaUGCGUGCUGca-GGUcgUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 2491 0.69 0.48652
Target:  5'- -cGCGCuuGGCGaCCAGCAGCaaccCGAUa -3'
miRNA:   3'- aaUGCGugCUGCaGGUCGUCGa---GCUG- -5'
23926 5' -55.8 NC_005262.1 + 50663 0.66 0.700229
Target:  5'- -cGCGCGCGGCGgaccuaauugugCCA-CGGUUCGAa -3'
miRNA:   3'- aaUGCGUGCUGCa-----------GGUcGUCGAGCUg -5'
23926 5' -55.8 NC_005262.1 + 4550 0.66 0.702386
Target:  5'- cUGCGCGugcUGAgCGUgCAGCAGCUCc-- -3'
miRNA:   3'- aAUGCGU---GCU-GCAgGUCGUCGAGcug -5'
23926 5' -55.8 NC_005262.1 + 25355 0.66 0.702386
Target:  5'- -aGCGUGcCGuCGUCCGGCGugauCUCGACc -3'
miRNA:   3'- aaUGCGU-GCuGCAGGUCGUc---GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 35078 0.66 0.702386
Target:  5'- -gGCGCGCGGCcUCgCGGCGGaaCUCGuCg -3'
miRNA:   3'- aaUGCGUGCUGcAG-GUCGUC--GAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 46635 0.66 0.702386
Target:  5'- -cGCGCGCGGCcuugCCGGCcuuCUCGAUu -3'
miRNA:   3'- aaUGCGUGCUGca--GGUCGuc-GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52081 0.66 0.702386
Target:  5'- aUGCGCAacaccUGAag--CAGCAGCUCGGCc -3'
miRNA:   3'- aAUGCGU-----GCUgcagGUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 29818 1.08 0.00111
Target:  5'- gUUACGCACGACGUCCAGCAGCUCGACg -3'
miRNA:   3'- -AAUGCGUGCUGCAGGUCGUCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.