miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 38970 0.66 0.713133
Target:  5'- ---gGCACGGCG-CCGGCcgcgaucgcgAGCUCGcGCu -3'
miRNA:   3'- aaugCGUGCUGCaGGUCG----------UCGAGC-UG- -5'
23926 5' -55.8 NC_005262.1 + 5153 0.66 0.669781
Target:  5'- -aACuCGCG-CGcCCGGCcGCUCGACu -3'
miRNA:   3'- aaUGcGUGCuGCaGGUCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 30757 0.67 0.658827
Target:  5'- ---aGUACGACGUCgGGCGGUaCGuCa -3'
miRNA:   3'- aaugCGUGCUGCAGgUCGUCGaGCuG- -5'
23926 5' -55.8 NC_005262.1 + 29818 1.08 0.00111
Target:  5'- gUUACGCACGACGUCCAGCAGCUCGACg -3'
miRNA:   3'- -AAUGCGUGCUGCAGGUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 25355 0.66 0.702386
Target:  5'- -aGCGUGcCGuCGUCCGGCGugauCUCGACc -3'
miRNA:   3'- aaUGCGU-GCuGCAGGUCGUc---GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4550 0.66 0.702386
Target:  5'- cUGCGCGugcUGAgCGUgCAGCAGCUCc-- -3'
miRNA:   3'- aAUGCGU---GCU-GCAgGUCGUCGAGcug -5'
23926 5' -55.8 NC_005262.1 + 53115 0.66 0.691571
Target:  5'- cUGCGCAUGcaggauGCGUUCGGCcuGCUCGuuuGCg -3'
miRNA:   3'- aAUGCGUGC------UGCAGGUCGu-CGAGC---UG- -5'
23926 5' -55.8 NC_005262.1 + 42100 0.66 0.691571
Target:  5'- cUGCGUGCccGCGUaCAGCAGCgCGGCg -3'
miRNA:   3'- aAUGCGUGc-UGCAgGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 46321 0.66 0.680699
Target:  5'- -gGCGCGCGcuuCGUCCuGgAaCUCGGCg -3'
miRNA:   3'- aaUGCGUGCu--GCAGGuCgUcGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 11084 0.66 0.669781
Target:  5'- -aGCaGCGCGGCcucGUCCGGCgucGGC-CGGCg -3'
miRNA:   3'- aaUG-CGUGCUG---CAGGUCG---UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 2773 0.66 0.680699
Target:  5'- gUUGCGguuaGCaGACGUCUcggcgAGCGGCUUGAUg -3'
miRNA:   3'- -AAUGCg---UG-CUGCAGG-----UCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 28961 0.66 0.680699
Target:  5'- -cGCGCGCGAggaaGUCgGGgAGCugaUCGGCa -3'
miRNA:   3'- aaUGCGUGCUg---CAGgUCgUCG---AGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52081 0.66 0.702386
Target:  5'- aUGCGCAacaccUGAag--CAGCAGCUCGGCc -3'
miRNA:   3'- aAUGCGU-----GCUgcagGUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 41610 0.66 0.669781
Target:  5'- -gGCGUucuCGGCuUCCAGCuuCUCGACc -3'
miRNA:   3'- aaUGCGu--GCUGcAGGUCGucGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 46635 0.66 0.702386
Target:  5'- -cGCGCGCGGCcuugCCGGCcuuCUCGAUu -3'
miRNA:   3'- aaUGCGUGCUGca--GGUCGuc-GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 20744 0.66 0.691571
Target:  5'- -gGCGCGCGGUG-CCGGCcGGgUCGAUg -3'
miRNA:   3'- aaUGCGUGCUGCaGGUCG-UCgAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 31880 0.66 0.669781
Target:  5'- --gUGguCGACGUCCGGC-GCgUCGAg -3'
miRNA:   3'- aauGCguGCUGCAGGUCGuCG-AGCUg -5'
23926 5' -55.8 NC_005262.1 + 52556 0.67 0.658827
Target:  5'- gUGCGCagcGCGAuCGUCgCuGUcgAGCUCGGCg -3'
miRNA:   3'- aAUGCG---UGCU-GCAG-GuCG--UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 35078 0.66 0.702386
Target:  5'- -gGCGCGCGGCcUCgCGGCGGaaCUCGuCg -3'
miRNA:   3'- aaUGCGUGCUGcAG-GUCGUC--GAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 50663 0.66 0.700229
Target:  5'- -cGCGCGCGGCGgaccuaauugugCCA-CGGUUCGAa -3'
miRNA:   3'- aaUGCGUGCUGCa-----------GGUcGUCGAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.