Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23926 | 5' | -55.8 | NC_005262.1 | + | 52122 | 0.67 | 0.647849 |
Target: 5'- gUUGCGCGCGAagcucugcCGgCCAgcguGCAGCgCGACg -3' miRNA: 3'- -AAUGCGUGCU--------GCaGGU----CGUCGaGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 30757 | 0.67 | 0.658827 |
Target: 5'- ---aGUACGACGUCgGGCGGUaCGuCa -3' miRNA: 3'- aaugCGUGCUGCAGgUCGUCGaGCuG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 28961 | 0.66 | 0.680699 |
Target: 5'- -cGCGCGCGAggaaGUCgGGgAGCugaUCGGCa -3' miRNA: 3'- aaUGCGUGCUg---CAGgUCgUCG---AGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 35078 | 0.66 | 0.702386 |
Target: 5'- -gGCGCGCGGCcUCgCGGCGGaaCUCGuCg -3' miRNA: 3'- aaUGCGUGCUGcAG-GUCGUC--GAGCuG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 4418 | 0.68 | 0.571142 |
Target: 5'- cUGCuGCGCGAgCG-CCuGgAGCUCGGCg -3' miRNA: 3'- aAUG-CGUGCU-GCaGGuCgUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 14054 | 0.68 | 0.592938 |
Target: 5'- -gGCGCcgcCGGCGUCgGuGCGGCUuCGGCc -3' miRNA: 3'- aaUGCGu--GCUGCAGgU-CGUCGA-GCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 5153 | 0.66 | 0.669781 |
Target: 5'- -aACuCGCG-CGcCCGGCcGCUCGACu -3' miRNA: 3'- aaUGcGUGCuGCaGGUCGuCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 46635 | 0.66 | 0.702386 |
Target: 5'- -cGCGCGCGGCcuugCCGGCcuuCUCGAUu -3' miRNA: 3'- aaUGCGUGCUGca--GGUCGuc-GAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 33161 | 0.67 | 0.614867 |
Target: 5'- -gACGCGgGcaccuugccgaGCGUCggCGGCGGCUCGAUc -3' miRNA: 3'- aaUGCGUgC-----------UGCAG--GUCGUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 52081 | 0.66 | 0.702386 |
Target: 5'- aUGCGCAacaccUGAag--CAGCAGCUCGGCc -3' miRNA: 3'- aAUGCGU-----GCUgcagGUCGUCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 52556 | 0.67 | 0.658827 |
Target: 5'- gUGCGCagcGCGAuCGUCgCuGUcgAGCUCGGCg -3' miRNA: 3'- aAUGCG---UGCU-GCAG-GuCG--UCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 45878 | 0.67 | 0.625859 |
Target: 5'- gUugGCGuCGGCGccgaUCGGCGGCUCGcCg -3' miRNA: 3'- aAugCGU-GCUGCa---GGUCGUCGAGCuG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 41610 | 0.66 | 0.669781 |
Target: 5'- -gGCGUucuCGGCuUCCAGCuuCUCGACc -3' miRNA: 3'- aaUGCGu--GCUGcAGGUCGucGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 46321 | 0.66 | 0.680699 |
Target: 5'- -gGCGCGCGcuuCGUCCuGgAaCUCGGCg -3' miRNA: 3'- aaUGCGUGCu--GCAGGuCgUcGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 53115 | 0.66 | 0.691571 |
Target: 5'- cUGCGCAUGcaggauGCGUUCGGCcuGCUCGuuuGCg -3' miRNA: 3'- aAUGCGUGC------UGCAGGUCGu-CGAGC---UG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 25355 | 0.66 | 0.702386 |
Target: 5'- -aGCGUGcCGuCGUCCGGCGugauCUCGACc -3' miRNA: 3'- aaUGCGU-GCuGCAGGUCGUc---GAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 12279 | 0.68 | 0.549543 |
Target: 5'- gUUGCGCACGGuCGUCUcgccguuGCGGC-CGAUc -3' miRNA: 3'- -AAUGCGUGCU-GCAGGu------CGUCGaGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 4833 | 0.68 | 0.571142 |
Target: 5'- --cCGC-CGGCGgCCGGCuGGUUCGACu -3' miRNA: 3'- aauGCGuGCUGCaGGUCG-UCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 46144 | 0.68 | 0.582019 |
Target: 5'- -gGCGCGCuGGCGggcgaucucugCCuGCuGCUCGGCg -3' miRNA: 3'- aaUGCGUG-CUGCa----------GGuCGuCGAGCUG- -5' |
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23926 | 5' | -55.8 | NC_005262.1 | + | 4656 | 0.68 | 0.592938 |
Target: 5'- aUGCGCGCGGCGacgcggcCCGGCcGGUUCGcCu -3' miRNA: 3'- aAUGCGUGCUGCa------GGUCG-UCGAGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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