miRNA display CGI


Results 41 - 60 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23926 5' -55.8 NC_005262.1 + 17760 0.68 0.571142
Target:  5'- -cGCGCAUGACuUCgUAGUAGCgCGGCa -3'
miRNA:   3'- aaUGCGUGCUGcAG-GUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 5153 0.66 0.669781
Target:  5'- -aACuCGCG-CGcCCGGCcGCUCGACu -3'
miRNA:   3'- aaUGcGUGCuGCaGGUCGuCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 46635 0.66 0.702386
Target:  5'- -cGCGCGCGGCcuugCCGGCcuuCUCGAUu -3'
miRNA:   3'- aaUGCGUGCUGca--GGUCGuc-GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 47380 0.68 0.582019
Target:  5'- cUUGCGCcucGCGGCGcagaaucCCGGCGGC-CGGCc -3'
miRNA:   3'- -AAUGCG---UGCUGCa------GGUCGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52081 0.66 0.702386
Target:  5'- aUGCGCAacaccUGAag--CAGCAGCUCGGCc -3'
miRNA:   3'- aAUGCGU-----GCUgcagGUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 15105 0.75 0.238037
Target:  5'- cUGCgGCGCGGCGUCCGGCuggaacgcgcuGGC-CGGCa -3'
miRNA:   3'- aAUG-CGUGCUGCAGGUCG-----------UCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 25355 0.66 0.702386
Target:  5'- -aGCGUGcCGuCGUCCGGCGugauCUCGACc -3'
miRNA:   3'- aaUGCGU-GCuGCAGGUCGUc---GAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 15713 0.73 0.314568
Target:  5'- -cGCGCGuCGGCGcCgGGCGGCUCGuCg -3'
miRNA:   3'- aaUGCGU-GCUGCaGgUCGUCGAGCuG- -5'
23926 5' -55.8 NC_005262.1 + 37518 0.71 0.390009
Target:  5'- -gACGCACGugGUCCGcgucguGCGGCagGAa -3'
miRNA:   3'- aaUGCGUGCugCAGGU------CGUCGagCUg -5'
23926 5' -55.8 NC_005262.1 + 42316 0.7 0.466267
Target:  5'- gUACGCAUGGCcgaugccCCAGCAGUagCGGCa -3'
miRNA:   3'- aAUGCGUGCUGca-----GGUCGUCGa-GCUG- -5'
23926 5' -55.8 NC_005262.1 + 2403 0.69 0.51765
Target:  5'- -cGCGCGCGAgGUCguagUAGCGGCUgcgcagCGGCu -3'
miRNA:   3'- aaUGCGUGCUgCAG----GUCGUCGA------GCUG- -5'
23926 5' -55.8 NC_005262.1 + 12279 0.68 0.549543
Target:  5'- gUUGCGCACGGuCGUCUcgccguuGCGGC-CGAUc -3'
miRNA:   3'- -AAUGCGUGCU-GCAGGu------CGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 4833 0.68 0.571142
Target:  5'- --cCGC-CGGCGgCCGGCuGGUUCGACu -3'
miRNA:   3'- aauGCGuGCUGCaGGUCG-UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 40350 0.68 0.592938
Target:  5'- -cGCGCAUG-CG-CCAGUcgucggacGGCUCGAUg -3'
miRNA:   3'- aaUGCGUGCuGCaGGUCG--------UCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 33161 0.67 0.614867
Target:  5'- -gACGCGgGcaccuugccgaGCGUCggCGGCGGCUCGAUc -3'
miRNA:   3'- aaUGCGUgC-----------UGCAG--GUCGUCGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 52122 0.67 0.647849
Target:  5'- gUUGCGCGCGAagcucugcCGgCCAgcguGCAGCgCGACg -3'
miRNA:   3'- -AAUGCGUGCU--------GCaGGU----CGUCGaGCUG- -5'
23926 5' -55.8 NC_005262.1 + 30757 0.67 0.658827
Target:  5'- ---aGUACGACGUCgGGCGGUaCGuCa -3'
miRNA:   3'- aaugCGUGCUGCAGgUCGUCGaGCuG- -5'
23926 5' -55.8 NC_005262.1 + 41610 0.66 0.669781
Target:  5'- -gGCGUucuCGGCuUCCAGCuuCUCGACc -3'
miRNA:   3'- aaUGCGu--GCUGcAGGUCGucGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 46321 0.66 0.680699
Target:  5'- -gGCGCGCGcuuCGUCCuGgAaCUCGGCg -3'
miRNA:   3'- aaUGCGUGCu--GCAGGuCgUcGAGCUG- -5'
23926 5' -55.8 NC_005262.1 + 53115 0.66 0.691571
Target:  5'- cUGCGCAUGcaggauGCGUUCGGCcuGCUCGuuuGCg -3'
miRNA:   3'- aAUGCGUGC------UGCAGGUCGu-CGAGC---UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.