miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23927 3' -58.1 NC_005262.1 + 31927 0.66 0.623158
Target:  5'- -aGUCGGGCGUucgaugaaGUCGaggUUGAuGCCGCg -3'
miRNA:   3'- uaCAGCUCGCA--------CAGCg--GGCUuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 26349 0.66 0.623158
Target:  5'- gAUGcCGGGCGUG-CgGUUCGAGaucguGCCGCg -3'
miRNA:   3'- -UACaGCUCGCACaG-CGGGCUU-----CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 19067 0.66 0.612461
Target:  5'- -aGUCGAGauaGUCGCggCCGA-GCUGCa -3'
miRNA:   3'- uaCAGCUCgcaCAGCG--GGCUuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 47548 0.66 0.611392
Target:  5'- -cGUCGgccaguacaaaaaGGCGacGUCGCCCGAcgaagcgaAGCgGCu -3'
miRNA:   3'- uaCAGC-------------UCGCa-CAGCGGGCU--------UCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 2638 0.66 0.601781
Target:  5'- -cGUC-AGC---UCGCCCGccGCCGCg -3'
miRNA:   3'- uaCAGcUCGcacAGCGGGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 21520 0.66 0.601781
Target:  5'- -cGUCGccGGUgcccGUGcCGCUCGucGCCGCa -3'
miRNA:   3'- uaCAGC--UCG----CACaGCGGGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 12460 0.66 0.601781
Target:  5'- -cGUCGAGac-GUCGCUCacggGgcGCCGCg -3'
miRNA:   3'- uaCAGCUCgcaCAGCGGG----CuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 46380 0.66 0.595383
Target:  5'- -gGUCGuccAGCGUGgCGCCCaGcgucucggcauugucGGCCGCc -3'
miRNA:   3'- uaCAGC---UCGCACaGCGGGcU---------------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 31086 0.66 0.591125
Target:  5'- -cGcCGAGCucgaugaUGUCGCCCaccugGAGGCCGg -3'
miRNA:   3'- uaCaGCUCGc------ACAGCGGG-----CUUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 27957 0.66 0.591125
Target:  5'- ---cUGGGCG-GUCGCggcgCCGAcGCCGCu -3'
miRNA:   3'- uacaGCUCGCaCAGCG----GGCUuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 58180 0.66 0.591125
Target:  5'- --cUCGGGCGagGUCGCgaacaUCGAcGCCGCc -3'
miRNA:   3'- uacAGCUCGCa-CAGCG-----GGCUuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 32493 0.66 0.591125
Target:  5'- --aUCG-GCGgacagacccauUGUCGCCgCGAucuuGGCCGCg -3'
miRNA:   3'- uacAGCuCGC-----------ACAGCGG-GCU----UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 17893 0.66 0.591125
Target:  5'- --aUCGAGCac--CGCCCGAuuuacggcgAGCCGCc -3'
miRNA:   3'- uacAGCUCGcacaGCGGGCU---------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 17249 0.66 0.591125
Target:  5'- -cGUCgcggGAGCGg--CGgCCGgcGCCGCg -3'
miRNA:   3'- uaCAG----CUCGCacaGCgGGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 19988 0.66 0.59006
Target:  5'- cGUGUCGccGCGa-UCGCCCGAAagcuccugcaucuGCUGCa -3'
miRNA:   3'- -UACAGCu-CGCacAGCGGGCUU-------------CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 41966 0.66 0.580501
Target:  5'- uGUGcCGcGCcUGUUGCCUGAcaccGCCGCg -3'
miRNA:   3'- -UACaGCuCGcACAGCGGGCUu---CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 8235 0.66 0.580501
Target:  5'- cUGUCG-GCGaa--GCUCGAAGCCGa -3'
miRNA:   3'- uACAGCuCGCacagCGGGCUUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 12668 0.66 0.569918
Target:  5'- -cGUCGAGCGccuUGUCGaCCGgcGCgucgaGCa -3'
miRNA:   3'- uaCAGCUCGC---ACAGCgGGCuuCGg----CG- -5'
23927 3' -58.1 NC_005262.1 + 61113 0.66 0.566752
Target:  5'- --cUCGAGCGUgagcuugcuacggcGgccaggacgcCGCCCGgcGCCGCg -3'
miRNA:   3'- uacAGCUCGCA--------------Ca---------GCGGGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 57338 0.67 0.548903
Target:  5'- -cGUCGAugccgGCGUcUCG-CCGGAGCCGa -3'
miRNA:   3'- uaCAGCU-----CGCAcAGCgGGCUUCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.