Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23927 | 3' | -58.1 | NC_005262.1 | + | 49215 | 0.67 | 0.538485 |
Target: 5'- uUGUUGGGUGcgGUgCGCgUGAGcGCCGCg -3' miRNA: 3'- uACAGCUCGCa-CA-GCGgGCUU-CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 59208 | 0.67 | 0.538485 |
Target: 5'- cUG-CGGGCGcucaCGCCCGAGcagcGCCGCc -3' miRNA: 3'- uACaGCUCGCaca-GCGGGCUU----CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 22663 | 0.67 | 0.538485 |
Target: 5'- ---gUGAaCGUGUCGUCCGAGcgcGCCGUg -3' miRNA: 3'- uacaGCUcGCACAGCGGGCUU---CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 52633 | 0.67 | 0.538485 |
Target: 5'- -cGUCG-GCGuUGUCGCa--GGGCCGCc -3' miRNA: 3'- uaCAGCuCGC-ACAGCGggcUUCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 52201 | 0.67 | 0.538485 |
Target: 5'- --aUCGuGUGgaaGUCGCUCGAgcgcuGGCCGCc -3' miRNA: 3'- uacAGCuCGCa--CAGCGGGCU-----UCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 49567 | 0.67 | 0.548903 |
Target: 5'- cUGcUCGuGCGUGgucgacaucgCGCCCGccgucaguGCCGCg -3' miRNA: 3'- uAC-AGCuCGCACa---------GCGGGCuu------CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 19862 | 0.67 | 0.548903 |
Target: 5'- -cGUCGcgcAGCGUGUUGUagucGGCCGCg -3' miRNA: 3'- uaCAGC---UCGCACAGCGggcuUCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 57338 | 0.67 | 0.548903 |
Target: 5'- -cGUCGAugccgGCGUcUCG-CCGGAGCCGa -3' miRNA: 3'- uaCAGCU-----CGCAcAGCgGGCUUCGGCg -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 16238 | 0.67 | 0.538485 |
Target: 5'- -cGUCGGGCGacGUCGCCUuuuuguacuGGCCGa -3' miRNA: 3'- uaCAGCUCGCa-CAGCGGGcu-------UCGGCg -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 15287 | 0.67 | 0.538485 |
Target: 5'- -gGUCGAGCGcgcUGUUaCCUGcGGCUGCc -3' miRNA: 3'- uaCAGCUCGC---ACAGcGGGCuUCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 21001 | 0.67 | 0.535373 |
Target: 5'- -cGUCGGGCGacgCGCCgGAgacgauguagggcuGGCCGUc -3' miRNA: 3'- uaCAGCUCGCacaGCGGgCU--------------UCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 33255 | 0.67 | 0.538485 |
Target: 5'- -cGUCGAGCGcuuccUGUCGauCCgCGAGGCguacCGCa -3' miRNA: 3'- uaCAGCUCGC-----ACAGC--GG-GCUUCG----GCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 54191 | 0.67 | 0.547858 |
Target: 5'- cUGUcCGAGCGcGUgcuccagCGCCCGcgcGAGCCGg -3' miRNA: 3'- uACA-GCUCGCaCA-------GCGGGC---UUCGGCg -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 44429 | 0.67 | 0.528136 |
Target: 5'- gAUGgCGAccuCGUGUCGCUCGGcauGCUGCg -3' miRNA: 3'- -UACaGCUc--GCACAGCGGGCUu--CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 6388 | 0.67 | 0.517861 |
Target: 5'- -gGUCGAGCGUGcUGCCgucguuuuCGAGGUacaGCu -3' miRNA: 3'- uaCAGCUCGCACaGCGG--------GCUUCGg--CG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 52671 | 0.67 | 0.516838 |
Target: 5'- -cGUCGAGCuUGUgaagcaGCUCGAgcaggaaGGCCGCc -3' miRNA: 3'- uaCAGCUCGcACAg-----CGGGCU-------UCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 34738 | 0.67 | 0.507667 |
Target: 5'- -gGUCGAgccgaacacgguGCGcGUCGUgCCGgcGCCGCu -3' miRNA: 3'- uaCAGCU------------CGCaCAGCG-GGCuuCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 41185 | 0.67 | 0.528136 |
Target: 5'- -cG-CGAucGCGUGcgCGCCCGgcGaCCGCu -3' miRNA: 3'- uaCaGCU--CGCACa-GCGGGCuuC-GGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 3971 | 0.67 | 0.517861 |
Target: 5'- -aGUCGAGCaccugauacGUGgCGCCUGcGGGCCGg -3' miRNA: 3'- uaCAGCUCG---------CACaGCGGGC-UUCGGCg -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 32605 | 0.67 | 0.548903 |
Target: 5'- uUGUCggcGAGCGUGaUCGUCgCGucGCCGa -3' miRNA: 3'- uACAG---CUCGCAC-AGCGG-GCuuCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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