Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23927 | 3' | -58.1 | NC_005262.1 | + | 29575 | 1.1 | 0.000551 |
Target: 5'- cAUGUCGAGCGUGUCGCCCGAAGCCGCg -3' miRNA: 3'- -UACAGCUCGCACAGCGGGCUUCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 31897 | 0.76 | 0.152435 |
Target: 5'- -cGUCGAGCGgGUUGCCCGcguAGcCCGUg -3' miRNA: 3'- uaCAGCUCGCaCAGCGGGCu--UC-GGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 49716 | 0.74 | 0.220079 |
Target: 5'- cGUGcCGGGCGgcgaaccggCGgCCGAAGCCGCa -3' miRNA: 3'- -UACaGCUCGCaca------GCgGGCUUCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 39014 | 0.74 | 0.214499 |
Target: 5'- gAUGUCGAa-GUGcUCGCCCGGcucGCCGCg -3' miRNA: 3'- -UACAGCUcgCAC-AGCGGGCUu--CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 54472 | 0.73 | 0.236964 |
Target: 5'- -cGUCGAgGCGcUGcUCGCggugcagCCGAAGCCGCu -3' miRNA: 3'- uaCAGCU-CGC-AC-AGCG-------GGCUUCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 42919 | 0.73 | 0.249857 |
Target: 5'- -cGUCGucGCGUcGUCGUCCGgcGCgCGCg -3' miRNA: 3'- uaCAGCu-CGCA-CAGCGGGCuuCG-GCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 48471 | 0.72 | 0.282884 |
Target: 5'- -gGUCGaAGC-UGUUGCUCGAcGGCCGCc -3' miRNA: 3'- uaCAGC-UCGcACAGCGGGCU-UCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 33885 | 0.72 | 0.276013 |
Target: 5'- -cGcCGAGCGUGgucgcaUCGCCCGAA-CCGUc -3' miRNA: 3'- uaCaGCUCGCAC------AGCGGGCUUcGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 1008 | 0.72 | 0.26267 |
Target: 5'- gGUGUaGAGCuUGUCGCCgaucuUGAGGCCGUg -3' miRNA: 3'- -UACAgCUCGcACAGCGG-----GCUUCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 27235 | 0.7 | 0.379362 |
Target: 5'- -gGUCGAGCaguuccgcgaggaucGUG-CGCCCGAuaaucccagucGCCGCg -3' miRNA: 3'- uaCAGCUCG---------------CACaGCGGGCUu----------CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 23230 | 0.7 | 0.358238 |
Target: 5'- -gGUCGcGGCaccgccgGUGUUGCCCGGcgcguaagAGCCGCc -3' miRNA: 3'- uaCAGC-UCG-------CACAGCGGGCU--------UCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 5901 | 0.7 | 0.354113 |
Target: 5'- gAUGUCGGGCGggagCGCCuucucgaucuccacgCGGAuGCCGCg -3' miRNA: 3'- -UACAGCUCGCaca-GCGG---------------GCUU-CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 4387 | 0.7 | 0.375927 |
Target: 5'- -gGUCGAGCGUugcgcgugcgauGUCGCgCGccuGCUGCg -3' miRNA: 3'- uaCAGCUCGCA------------CAGCGgGCuu-CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 63499 | 0.69 | 0.42035 |
Target: 5'- cGUGccCGAcGCcUGUCGCaaggagCCGGAGCCGCg -3' miRNA: 3'- -UACa-GCU-CGcACAGCG------GGCUUCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 4583 | 0.69 | 0.438987 |
Target: 5'- cUGUUcaGGCGUGUgGCCCGAcuUCGCa -3' miRNA: 3'- uACAGc-UCGCACAgCGGGCUucGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 59345 | 0.69 | 0.400412 |
Target: 5'- --aUCGAGUcuaucgaacCGCCCGGAGCCGCc -3' miRNA: 3'- uacAGCUCGcaca-----GCGGGCUUCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 6628 | 0.69 | 0.433346 |
Target: 5'- ---aCGAGCGgcgagggGUCGCCgGGgaugucgaccgacacGGCCGCg -3' miRNA: 3'- uacaGCUCGCa------CAGCGGgCU---------------UCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 16385 | 0.69 | 0.412121 |
Target: 5'- -cGUCGAGCuUGcuuuucugcgcgucgCGCUCGAGGUCGCc -3' miRNA: 3'- uaCAGCUCGcACa--------------GCGGGCUUCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 43273 | 0.69 | 0.42035 |
Target: 5'- --uUCGAGUGgggugagGUCGUCgCGAGcGCCGCg -3' miRNA: 3'- uacAGCUCGCa------CAGCGG-GCUU-CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 62663 | 0.69 | 0.411213 |
Target: 5'- -cGUCGGGgGUGgguuuagucCGCCCGGcGGCgGCa -3' miRNA: 3'- uaCAGCUCgCACa--------GCGGGCU-UCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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