miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23927 3' -58.1 NC_005262.1 + 29575 1.1 0.000551
Target:  5'- cAUGUCGAGCGUGUCGCCCGAAGCCGCg -3'
miRNA:   3'- -UACAGCUCGCACAGCGGGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 31897 0.76 0.152435
Target:  5'- -cGUCGAGCGgGUUGCCCGcguAGcCCGUg -3'
miRNA:   3'- uaCAGCUCGCaCAGCGGGCu--UC-GGCG- -5'
23927 3' -58.1 NC_005262.1 + 39014 0.74 0.214499
Target:  5'- gAUGUCGAa-GUGcUCGCCCGGcucGCCGCg -3'
miRNA:   3'- -UACAGCUcgCAC-AGCGGGCUu--CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 49716 0.74 0.220079
Target:  5'- cGUGcCGGGCGgcgaaccggCGgCCGAAGCCGCa -3'
miRNA:   3'- -UACaGCUCGCaca------GCgGGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 54472 0.73 0.236964
Target:  5'- -cGUCGAgGCGcUGcUCGCggugcagCCGAAGCCGCu -3'
miRNA:   3'- uaCAGCU-CGC-AC-AGCG-------GGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 42919 0.73 0.249857
Target:  5'- -cGUCGucGCGUcGUCGUCCGgcGCgCGCg -3'
miRNA:   3'- uaCAGCu-CGCA-CAGCGGGCuuCG-GCG- -5'
23927 3' -58.1 NC_005262.1 + 1008 0.72 0.26267
Target:  5'- gGUGUaGAGCuUGUCGCCgaucuUGAGGCCGUg -3'
miRNA:   3'- -UACAgCUCGcACAGCGG-----GCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 33885 0.72 0.276013
Target:  5'- -cGcCGAGCGUGgucgcaUCGCCCGAA-CCGUc -3'
miRNA:   3'- uaCaGCUCGCAC------AGCGGGCUUcGGCG- -5'
23927 3' -58.1 NC_005262.1 + 48471 0.72 0.282884
Target:  5'- -gGUCGaAGC-UGUUGCUCGAcGGCCGCc -3'
miRNA:   3'- uaCAGC-UCGcACAGCGGGCU-UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 5901 0.7 0.354113
Target:  5'- gAUGUCGGGCGggagCGCCuucucgaucuccacgCGGAuGCCGCg -3'
miRNA:   3'- -UACAGCUCGCaca-GCGG---------------GCUU-CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 23230 0.7 0.358238
Target:  5'- -gGUCGcGGCaccgccgGUGUUGCCCGGcgcguaagAGCCGCc -3'
miRNA:   3'- uaCAGC-UCG-------CACAGCGGGCU--------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 4387 0.7 0.375927
Target:  5'- -gGUCGAGCGUugcgcgugcgauGUCGCgCGccuGCUGCg -3'
miRNA:   3'- uaCAGCUCGCA------------CAGCGgGCuu-CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 27235 0.7 0.379362
Target:  5'- -gGUCGAGCaguuccgcgaggaucGUG-CGCCCGAuaaucccagucGCCGCg -3'
miRNA:   3'- uaCAGCUCG---------------CACaGCGGGCUu----------CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 59345 0.69 0.400412
Target:  5'- --aUCGAGUcuaucgaacCGCCCGGAGCCGCc -3'
miRNA:   3'- uacAGCUCGcaca-----GCGGGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 4337 0.69 0.4022
Target:  5'- -cG-CGAGCGUGUCGUgauCCuccugagugauGAGGCCGUa -3'
miRNA:   3'- uaCaGCUCGCACAGCG---GG-----------CUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 62663 0.69 0.411213
Target:  5'- -cGUCGGGgGUGgguuuagucCGCCCGGcGGCgGCa -3'
miRNA:   3'- uaCAGCUCgCACa--------GCGGGCU-UCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 42797 0.69 0.411213
Target:  5'- -cGUCuccGGCGcGUCGCCCGAcGCCa- -3'
miRNA:   3'- uaCAGc--UCGCaCAGCGGGCUuCGGcg -5'
23927 3' -58.1 NC_005262.1 + 16385 0.69 0.412121
Target:  5'- -cGUCGAGCuUGcuuuucugcgcgucgCGCUCGAGGUCGCc -3'
miRNA:   3'- uaCAGCUCGcACa--------------GCGGGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 63499 0.69 0.42035
Target:  5'- cGUGccCGAcGCcUGUCGCaaggagCCGGAGCCGCg -3'
miRNA:   3'- -UACa-GCU-CGcACAGCG------GGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 43273 0.69 0.42035
Target:  5'- --uUCGAGUGgggugagGUCGUCgCGAGcGCCGCg -3'
miRNA:   3'- uacAGCUCGCa------CAGCGG-GCUU-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.