miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23927 3' -58.1 NC_005262.1 + 6628 0.69 0.433346
Target:  5'- ---aCGAGCGgcgagggGUCGCCgGGgaugucgaccgacacGGCCGCg -3'
miRNA:   3'- uacaGCUCGCa------CAGCGGgCU---------------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 4583 0.69 0.438987
Target:  5'- cUGUUcaGGCGUGUgGCCCGAcuUCGCa -3'
miRNA:   3'- uACAGc-UCGCACAgCGGGCUucGGCG- -5'
23927 3' -58.1 NC_005262.1 + 56810 0.68 0.467802
Target:  5'- -cGUCGAGCGgcUGgagCGCCUG-AGCuaCGCg -3'
miRNA:   3'- uaCAGCUCGC--ACa--GCGGGCuUCG--GCG- -5'
23927 3' -58.1 NC_005262.1 + 11870 0.68 0.477621
Target:  5'- cUGUCGGcGaCGUGuaUCGCgCGAaagguGGCCGCg -3'
miRNA:   3'- uACAGCU-C-GCAC--AGCGgGCU-----UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 17608 0.68 0.477621
Target:  5'- cAUGUUGAaguGCGUGaUCGCCUc-GGCCGUc -3'
miRNA:   3'- -UACAGCU---CGCAC-AGCGGGcuUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 14374 0.68 0.487542
Target:  5'- -cG-CGAGUGcgcgGUCGCCCau-GCCGCc -3'
miRNA:   3'- uaCaGCUCGCa---CAGCGGGcuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 58922 0.68 0.487542
Target:  5'- -gGUCGAGuCGg--CGCUCGGcaAGCUGCg -3'
miRNA:   3'- uaCAGCUC-GCacaGCGGGCU--UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 4589 0.68 0.496553
Target:  5'- cUGcUCGGGCGUGagCGCCCGcaggaacGGGCgGUg -3'
miRNA:   3'- uAC-AGCUCGCACa-GCGGGC-------UUCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 3318 0.68 0.496553
Target:  5'- gGUG-CGAGCuGUuggucuugcucuuGUCGCUgaugaCGAGGCCGCg -3'
miRNA:   3'- -UACaGCUCG-CA-------------CAGCGG-----GCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 7034 0.68 0.497559
Target:  5'- cAUGU--AGCGcucGUCGCCCGAcGCCaGCg -3'
miRNA:   3'- -UACAgcUCGCa--CAGCGGGCUuCGG-CG- -5'
23927 3' -58.1 NC_005262.1 + 54398 0.68 0.497559
Target:  5'- cUGUCGGGCaacGUCGUgCGcAAGCuCGCg -3'
miRNA:   3'- uACAGCUCGca-CAGCGgGC-UUCG-GCG- -5'
23927 3' -58.1 NC_005262.1 + 34738 0.67 0.507667
Target:  5'- -gGUCGAgccgaacacgguGCGcGUCGUgCCGgcGCCGCu -3'
miRNA:   3'- uaCAGCU------------CGCaCAGCG-GGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 46042 0.67 0.507667
Target:  5'- --uUCGAgcaGCGUGUCGUCCGc--CCGCu -3'
miRNA:   3'- uacAGCU---CGCACAGCGGGCuucGGCG- -5'
23927 3' -58.1 NC_005262.1 + 52671 0.67 0.516838
Target:  5'- -cGUCGAGCuUGUgaagcaGCUCGAgcaggaaGGCCGCc -3'
miRNA:   3'- uaCAGCUCGcACAg-----CGGGCU-------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 6388 0.67 0.517861
Target:  5'- -gGUCGAGCGUGcUGCCgucguuuuCGAGGUacaGCu -3'
miRNA:   3'- uaCAGCUCGCACaGCGG--------GCUUCGg--CG- -5'
23927 3' -58.1 NC_005262.1 + 3971 0.67 0.517861
Target:  5'- -aGUCGAGCaccugauacGUGgCGCCUGcGGGCCGg -3'
miRNA:   3'- uaCAGCUCG---------CACaGCGGGC-UUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 41185 0.67 0.528136
Target:  5'- -cG-CGAucGCGUGcgCGCCCGgcGaCCGCu -3'
miRNA:   3'- uaCaGCU--CGCACa-GCGGGCuuC-GGCG- -5'
23927 3' -58.1 NC_005262.1 + 44429 0.67 0.528136
Target:  5'- gAUGgCGAccuCGUGUCGCUCGGcauGCUGCg -3'
miRNA:   3'- -UACaGCUc--GCACAGCGGGCUu--CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 21001 0.67 0.535373
Target:  5'- -cGUCGGGCGacgCGCCgGAgacgauguagggcuGGCCGUc -3'
miRNA:   3'- uaCAGCUCGCacaGCGGgCU--------------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 22663 0.67 0.538485
Target:  5'- ---gUGAaCGUGUCGUCCGAGcgcGCCGUg -3'
miRNA:   3'- uacaGCUcGCACAGCGGGCUU---CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.