Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23927 | 3' | -58.1 | NC_005262.1 | + | 31927 | 0.66 | 0.623158 |
Target: 5'- -aGUCGGGCGUucgaugaaGUCGaggUUGAuGCCGCg -3' miRNA: 3'- uaCAGCUCGCA--------CAGCg--GGCUuCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 26349 | 0.66 | 0.623158 |
Target: 5'- gAUGcCGGGCGUG-CgGUUCGAGaucguGCCGCg -3' miRNA: 3'- -UACaGCUCGCACaG-CGGGCUU-----CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 19067 | 0.66 | 0.612461 |
Target: 5'- -aGUCGAGauaGUCGCggCCGA-GCUGCa -3' miRNA: 3'- uaCAGCUCgcaCAGCG--GGCUuCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 47548 | 0.66 | 0.611392 |
Target: 5'- -cGUCGgccaguacaaaaaGGCGacGUCGCCCGAcgaagcgaAGCgGCu -3' miRNA: 3'- uaCAGC-------------UCGCa-CAGCGGGCU--------UCGgCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 2638 | 0.66 | 0.601781 |
Target: 5'- -cGUC-AGC---UCGCCCGccGCCGCg -3' miRNA: 3'- uaCAGcUCGcacAGCGGGCuuCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 21520 | 0.66 | 0.601781 |
Target: 5'- -cGUCGccGGUgcccGUGcCGCUCGucGCCGCa -3' miRNA: 3'- uaCAGC--UCG----CACaGCGGGCuuCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 12460 | 0.66 | 0.601781 |
Target: 5'- -cGUCGAGac-GUCGCUCacggGgcGCCGCg -3' miRNA: 3'- uaCAGCUCgcaCAGCGGG----CuuCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 46380 | 0.66 | 0.595383 |
Target: 5'- -gGUCGuccAGCGUGgCGCCCaGcgucucggcauugucGGCCGCc -3' miRNA: 3'- uaCAGC---UCGCACaGCGGGcU---------------UCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 31086 | 0.66 | 0.591125 |
Target: 5'- -cGcCGAGCucgaugaUGUCGCCCaccugGAGGCCGg -3' miRNA: 3'- uaCaGCUCGc------ACAGCGGG-----CUUCGGCg -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 27957 | 0.66 | 0.591125 |
Target: 5'- ---cUGGGCG-GUCGCggcgCCGAcGCCGCu -3' miRNA: 3'- uacaGCUCGCaCAGCG----GGCUuCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 58180 | 0.66 | 0.591125 |
Target: 5'- --cUCGGGCGagGUCGCgaacaUCGAcGCCGCc -3' miRNA: 3'- uacAGCUCGCa-CAGCG-----GGCUuCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 32493 | 0.66 | 0.591125 |
Target: 5'- --aUCG-GCGgacagacccauUGUCGCCgCGAucuuGGCCGCg -3' miRNA: 3'- uacAGCuCGC-----------ACAGCGG-GCU----UCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 17893 | 0.66 | 0.591125 |
Target: 5'- --aUCGAGCac--CGCCCGAuuuacggcgAGCCGCc -3' miRNA: 3'- uacAGCUCGcacaGCGGGCU---------UCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 17249 | 0.66 | 0.591125 |
Target: 5'- -cGUCgcggGAGCGg--CGgCCGgcGCCGCg -3' miRNA: 3'- uaCAG----CUCGCacaGCgGGCuuCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 19988 | 0.66 | 0.59006 |
Target: 5'- cGUGUCGccGCGa-UCGCCCGAAagcuccugcaucuGCUGCa -3' miRNA: 3'- -UACAGCu-CGCacAGCGGGCUU-------------CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 41966 | 0.66 | 0.580501 |
Target: 5'- uGUGcCGcGCcUGUUGCCUGAcaccGCCGCg -3' miRNA: 3'- -UACaGCuCGcACAGCGGGCUu---CGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 8235 | 0.66 | 0.580501 |
Target: 5'- cUGUCG-GCGaa--GCUCGAAGCCGa -3' miRNA: 3'- uACAGCuCGCacagCGGGCUUCGGCg -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 12668 | 0.66 | 0.569918 |
Target: 5'- -cGUCGAGCGccuUGUCGaCCGgcGCgucgaGCa -3' miRNA: 3'- uaCAGCUCGC---ACAGCgGGCuuCGg----CG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 61113 | 0.66 | 0.566752 |
Target: 5'- --cUCGAGCGUgagcuugcuacggcGgccaggacgcCGCCCGgcGCCGCg -3' miRNA: 3'- uacAGCUCGCA--------------Ca---------GCGGGCuuCGGCG- -5' |
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23927 | 3' | -58.1 | NC_005262.1 | + | 57338 | 0.67 | 0.548903 |
Target: 5'- -cGUCGAugccgGCGUcUCG-CCGGAGCCGa -3' miRNA: 3'- uaCAGCU-----CGCAcAGCgGGCUUCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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