miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23927 3' -58.1 NC_005262.1 + 57338 0.67 0.548903
Target:  5'- -cGUCGAugccgGCGUcUCG-CCGGAGCCGa -3'
miRNA:   3'- uaCAGCU-----CGCAcAGCgGGCUUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 19862 0.67 0.548903
Target:  5'- -cGUCGcgcAGCGUGUUGUagucGGCCGCg -3'
miRNA:   3'- uaCAGC---UCGCACAGCGggcuUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 49567 0.67 0.548903
Target:  5'- cUGcUCGuGCGUGgucgacaucgCGCCCGccgucaguGCCGCg -3'
miRNA:   3'- uAC-AGCuCGCACa---------GCGGGCuu------CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 54191 0.67 0.547858
Target:  5'- cUGUcCGAGCGcGUgcuccagCGCCCGcgcGAGCCGg -3'
miRNA:   3'- uACA-GCUCGCaCA-------GCGGGC---UUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 59208 0.67 0.538485
Target:  5'- cUG-CGGGCGcucaCGCCCGAGcagcGCCGCc -3'
miRNA:   3'- uACaGCUCGCaca-GCGGGCUU----CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 22663 0.67 0.538485
Target:  5'- ---gUGAaCGUGUCGUCCGAGcgcGCCGUg -3'
miRNA:   3'- uacaGCUcGCACAGCGGGCUU---CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 52201 0.67 0.538485
Target:  5'- --aUCGuGUGgaaGUCGCUCGAgcgcuGGCCGCc -3'
miRNA:   3'- uacAGCuCGCa--CAGCGGGCU-----UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 52633 0.67 0.538485
Target:  5'- -cGUCG-GCGuUGUCGCa--GGGCCGCc -3'
miRNA:   3'- uaCAGCuCGC-ACAGCGggcUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 49215 0.67 0.538485
Target:  5'- uUGUUGGGUGcgGUgCGCgUGAGcGCCGCg -3'
miRNA:   3'- uACAGCUCGCa-CA-GCGgGCUU-CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 16238 0.67 0.538485
Target:  5'- -cGUCGGGCGacGUCGCCUuuuuguacuGGCCGa -3'
miRNA:   3'- uaCAGCUCGCa-CAGCGGGcu-------UCGGCg -5'
23927 3' -58.1 NC_005262.1 + 15287 0.67 0.538485
Target:  5'- -gGUCGAGCGcgcUGUUaCCUGcGGCUGCc -3'
miRNA:   3'- uaCAGCUCGC---ACAGcGGGCuUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 33255 0.67 0.538485
Target:  5'- -cGUCGAGCGcuuccUGUCGauCCgCGAGGCguacCGCa -3'
miRNA:   3'- uaCAGCUCGC-----ACAGC--GG-GCUUCG----GCG- -5'
23927 3' -58.1 NC_005262.1 + 56893 0.67 0.538485
Target:  5'- -gGUCGAGCGcGacaacacgcUCGCCgGcgagaucaAGGCCGCg -3'
miRNA:   3'- uaCAGCUCGCaC---------AGCGGgC--------UUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 21001 0.67 0.535373
Target:  5'- -cGUCGGGCGacgCGCCgGAgacgauguagggcuGGCCGUc -3'
miRNA:   3'- uaCAGCUCGCacaGCGGgCU--------------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 41185 0.67 0.528136
Target:  5'- -cG-CGAucGCGUGcgCGCCCGgcGaCCGCu -3'
miRNA:   3'- uaCaGCU--CGCACa-GCGGGCuuC-GGCG- -5'
23927 3' -58.1 NC_005262.1 + 44429 0.67 0.528136
Target:  5'- gAUGgCGAccuCGUGUCGCUCGGcauGCUGCg -3'
miRNA:   3'- -UACaGCUc--GCACAGCGGGCUu--CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 3971 0.67 0.517861
Target:  5'- -aGUCGAGCaccugauacGUGgCGCCUGcGGGCCGg -3'
miRNA:   3'- uaCAGCUCG---------CACaGCGGGC-UUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 6388 0.67 0.517861
Target:  5'- -gGUCGAGCGUGcUGCCgucguuuuCGAGGUacaGCu -3'
miRNA:   3'- uaCAGCUCGCACaGCGG--------GCUUCGg--CG- -5'
23927 3' -58.1 NC_005262.1 + 52671 0.67 0.516838
Target:  5'- -cGUCGAGCuUGUgaagcaGCUCGAgcaggaaGGCCGCc -3'
miRNA:   3'- uaCAGCUCGcACAg-----CGGGCU-------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 34738 0.67 0.507667
Target:  5'- -gGUCGAgccgaacacgguGCGcGUCGUgCCGgcGCCGCu -3'
miRNA:   3'- uaCAGCU------------CGCaCAGCG-GGCuuCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.