miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23927 3' -58.1 NC_005262.1 + 34738 0.67 0.507667
Target:  5'- -gGUCGAgccgaacacgguGCGcGUCGUgCCGgcGCCGCu -3'
miRNA:   3'- uaCAGCU------------CGCaCAGCG-GGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 7034 0.68 0.497559
Target:  5'- cAUGU--AGCGcucGUCGCCCGAcGCCaGCg -3'
miRNA:   3'- -UACAgcUCGCa--CAGCGGGCUuCGG-CG- -5'
23927 3' -58.1 NC_005262.1 + 54398 0.68 0.497559
Target:  5'- cUGUCGGGCaacGUCGUgCGcAAGCuCGCg -3'
miRNA:   3'- uACAGCUCGca-CAGCGgGC-UUCG-GCG- -5'
23927 3' -58.1 NC_005262.1 + 3318 0.68 0.496553
Target:  5'- gGUG-CGAGCuGUuggucuugcucuuGUCGCUgaugaCGAGGCCGCg -3'
miRNA:   3'- -UACaGCUCG-CA-------------CAGCGG-----GCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 4589 0.68 0.496553
Target:  5'- cUGcUCGGGCGUGagCGCCCGcaggaacGGGCgGUg -3'
miRNA:   3'- uAC-AGCUCGCACa-GCGGGC-------UUCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 14374 0.68 0.487542
Target:  5'- -cG-CGAGUGcgcgGUCGCCCau-GCCGCc -3'
miRNA:   3'- uaCaGCUCGCa---CAGCGGGcuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 58922 0.68 0.487542
Target:  5'- -gGUCGAGuCGg--CGCUCGGcaAGCUGCg -3'
miRNA:   3'- uaCAGCUC-GCacaGCGGGCU--UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 11870 0.68 0.477621
Target:  5'- cUGUCGGcGaCGUGuaUCGCgCGAaagguGGCCGCg -3'
miRNA:   3'- uACAGCU-C-GCAC--AGCGgGCU-----UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 17608 0.68 0.477621
Target:  5'- cAUGUUGAaguGCGUGaUCGCCUc-GGCCGUc -3'
miRNA:   3'- -UACAGCU---CGCAC-AGCGGGcuUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 56810 0.68 0.467802
Target:  5'- -cGUCGAGCGgcUGgagCGCCUG-AGCuaCGCg -3'
miRNA:   3'- uaCAGCUCGC--ACa--GCGGGCuUCG--GCG- -5'
23927 3' -58.1 NC_005262.1 + 4583 0.69 0.438987
Target:  5'- cUGUUcaGGCGUGUgGCCCGAcuUCGCa -3'
miRNA:   3'- uACAGc-UCGCACAgCGGGCUucGGCG- -5'
23927 3' -58.1 NC_005262.1 + 6628 0.69 0.433346
Target:  5'- ---aCGAGCGgcgagggGUCGCCgGGgaugucgaccgacacGGCCGCg -3'
miRNA:   3'- uacaGCUCGCa------CAGCGGgCU---------------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 63499 0.69 0.42035
Target:  5'- cGUGccCGAcGCcUGUCGCaaggagCCGGAGCCGCg -3'
miRNA:   3'- -UACa-GCU-CGcACAGCG------GGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 43273 0.69 0.42035
Target:  5'- --uUCGAGUGgggugagGUCGUCgCGAGcGCCGCg -3'
miRNA:   3'- uacAGCUCGCa------CAGCGG-GCUU-CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 16385 0.69 0.412121
Target:  5'- -cGUCGAGCuUGcuuuucugcgcgucgCGCUCGAGGUCGCc -3'
miRNA:   3'- uaCAGCUCGcACa--------------GCGGGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 42797 0.69 0.411213
Target:  5'- -cGUCuccGGCGcGUCGCCCGAcGCCa- -3'
miRNA:   3'- uaCAGc--UCGCaCAGCGGGCUuCGGcg -5'
23927 3' -58.1 NC_005262.1 + 62663 0.69 0.411213
Target:  5'- -cGUCGGGgGUGgguuuagucCGCCCGGcGGCgGCa -3'
miRNA:   3'- uaCAGCUCgCACa--------GCGGGCU-UCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 4337 0.69 0.4022
Target:  5'- -cG-CGAGCGUGUCGUgauCCuccugagugauGAGGCCGUa -3'
miRNA:   3'- uaCaGCUCGCACAGCG---GG-----------CUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 59345 0.69 0.400412
Target:  5'- --aUCGAGUcuaucgaacCGCCCGGAGCCGCc -3'
miRNA:   3'- uacAGCUCGcaca-----GCGGGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 27235 0.7 0.379362
Target:  5'- -gGUCGAGCaguuccgcgaggaucGUG-CGCCCGAuaaucccagucGCCGCg -3'
miRNA:   3'- uaCAGCUCG---------------CACaGCGGGCUu----------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.