miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23927 3' -58.1 NC_005262.1 + 1008 0.72 0.26267
Target:  5'- gGUGUaGAGCuUGUCGCCgaucuUGAGGCCGUg -3'
miRNA:   3'- -UACAgCUCGcACAGCGG-----GCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 2638 0.66 0.601781
Target:  5'- -cGUC-AGC---UCGCCCGccGCCGCg -3'
miRNA:   3'- uaCAGcUCGcacAGCGGGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 3318 0.68 0.496553
Target:  5'- gGUG-CGAGCuGUuggucuugcucuuGUCGCUgaugaCGAGGCCGCg -3'
miRNA:   3'- -UACaGCUCG-CA-------------CAGCGG-----GCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 3971 0.67 0.517861
Target:  5'- -aGUCGAGCaccugauacGUGgCGCCUGcGGGCCGg -3'
miRNA:   3'- uaCAGCUCG---------CACaGCGGGC-UUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 4337 0.69 0.4022
Target:  5'- -cG-CGAGCGUGUCGUgauCCuccugagugauGAGGCCGUa -3'
miRNA:   3'- uaCaGCUCGCACAGCG---GG-----------CUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 4387 0.7 0.375927
Target:  5'- -gGUCGAGCGUugcgcgugcgauGUCGCgCGccuGCUGCg -3'
miRNA:   3'- uaCAGCUCGCA------------CAGCGgGCuu-CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 4583 0.69 0.438987
Target:  5'- cUGUUcaGGCGUGUgGCCCGAcuUCGCa -3'
miRNA:   3'- uACAGc-UCGCACAgCGGGCUucGGCG- -5'
23927 3' -58.1 NC_005262.1 + 4589 0.68 0.496553
Target:  5'- cUGcUCGGGCGUGagCGCCCGcaggaacGGGCgGUg -3'
miRNA:   3'- uAC-AGCUCGCACa-GCGGGC-------UUCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 5901 0.7 0.354113
Target:  5'- gAUGUCGGGCGggagCGCCuucucgaucuccacgCGGAuGCCGCg -3'
miRNA:   3'- -UACAGCUCGCaca-GCGG---------------GCUU-CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 6388 0.67 0.517861
Target:  5'- -gGUCGAGCGUGcUGCCgucguuuuCGAGGUacaGCu -3'
miRNA:   3'- uaCAGCUCGCACaGCGG--------GCUUCGg--CG- -5'
23927 3' -58.1 NC_005262.1 + 6628 0.69 0.433346
Target:  5'- ---aCGAGCGgcgagggGUCGCCgGGgaugucgaccgacacGGCCGCg -3'
miRNA:   3'- uacaGCUCGCa------CAGCGGgCU---------------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 7034 0.68 0.497559
Target:  5'- cAUGU--AGCGcucGUCGCCCGAcGCCaGCg -3'
miRNA:   3'- -UACAgcUCGCa--CAGCGGGCUuCGG-CG- -5'
23927 3' -58.1 NC_005262.1 + 8235 0.66 0.580501
Target:  5'- cUGUCG-GCGaa--GCUCGAAGCCGa -3'
miRNA:   3'- uACAGCuCGCacagCGGGCUUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 11870 0.68 0.477621
Target:  5'- cUGUCGGcGaCGUGuaUCGCgCGAaagguGGCCGCg -3'
miRNA:   3'- uACAGCU-C-GCAC--AGCGgGCU-----UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 12460 0.66 0.601781
Target:  5'- -cGUCGAGac-GUCGCUCacggGgcGCCGCg -3'
miRNA:   3'- uaCAGCUCgcaCAGCGGG----CuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 12668 0.66 0.569918
Target:  5'- -cGUCGAGCGccuUGUCGaCCGgcGCgucgaGCa -3'
miRNA:   3'- uaCAGCUCGC---ACAGCgGGCuuCGg----CG- -5'
23927 3' -58.1 NC_005262.1 + 14374 0.68 0.487542
Target:  5'- -cG-CGAGUGcgcgGUCGCCCau-GCCGCc -3'
miRNA:   3'- uaCaGCUCGCa---CAGCGGGcuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 15287 0.67 0.538485
Target:  5'- -gGUCGAGCGcgcUGUUaCCUGcGGCUGCc -3'
miRNA:   3'- uaCAGCUCGC---ACAGcGGGCuUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 16238 0.67 0.538485
Target:  5'- -cGUCGGGCGacGUCGCCUuuuuguacuGGCCGa -3'
miRNA:   3'- uaCAGCUCGCa-CAGCGGGcu-------UCGGCg -5'
23927 3' -58.1 NC_005262.1 + 16385 0.69 0.412121
Target:  5'- -cGUCGAGCuUGcuuuucugcgcgucgCGCUCGAGGUCGCc -3'
miRNA:   3'- uaCAGCUCGcACa--------------GCGGGCUUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.