miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23927 3' -58.1 NC_005262.1 + 63499 0.69 0.42035
Target:  5'- cGUGccCGAcGCcUGUCGCaaggagCCGGAGCCGCg -3'
miRNA:   3'- -UACa-GCU-CGcACAGCG------GGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 62663 0.69 0.411213
Target:  5'- -cGUCGGGgGUGgguuuagucCGCCCGGcGGCgGCa -3'
miRNA:   3'- uaCAGCUCgCACa--------GCGGGCU-UCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 61113 0.66 0.566752
Target:  5'- --cUCGAGCGUgagcuugcuacggcGgccaggacgcCGCCCGgcGCCGCg -3'
miRNA:   3'- uacAGCUCGCA--------------Ca---------GCGGGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 59345 0.69 0.400412
Target:  5'- --aUCGAGUcuaucgaacCGCCCGGAGCCGCc -3'
miRNA:   3'- uacAGCUCGcaca-----GCGGGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 59208 0.67 0.538485
Target:  5'- cUG-CGGGCGcucaCGCCCGAGcagcGCCGCc -3'
miRNA:   3'- uACaGCUCGCaca-GCGGGCUU----CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 58922 0.68 0.487542
Target:  5'- -gGUCGAGuCGg--CGCUCGGcaAGCUGCg -3'
miRNA:   3'- uaCAGCUC-GCacaGCGGGCU--UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 58180 0.66 0.591125
Target:  5'- --cUCGGGCGagGUCGCgaacaUCGAcGCCGCc -3'
miRNA:   3'- uacAGCUCGCa-CAGCG-----GGCUuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 57338 0.67 0.548903
Target:  5'- -cGUCGAugccgGCGUcUCG-CCGGAGCCGa -3'
miRNA:   3'- uaCAGCU-----CGCAcAGCgGGCUUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 56893 0.67 0.538485
Target:  5'- -gGUCGAGCGcGacaacacgcUCGCCgGcgagaucaAGGCCGCg -3'
miRNA:   3'- uaCAGCUCGCaC---------AGCGGgC--------UUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 56810 0.68 0.467802
Target:  5'- -cGUCGAGCGgcUGgagCGCCUG-AGCuaCGCg -3'
miRNA:   3'- uaCAGCUCGC--ACa--GCGGGCuUCG--GCG- -5'
23927 3' -58.1 NC_005262.1 + 54472 0.73 0.236964
Target:  5'- -cGUCGAgGCGcUGcUCGCggugcagCCGAAGCCGCu -3'
miRNA:   3'- uaCAGCU-CGC-AC-AGCG-------GGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 54398 0.68 0.497559
Target:  5'- cUGUCGGGCaacGUCGUgCGcAAGCuCGCg -3'
miRNA:   3'- uACAGCUCGca-CAGCGgGC-UUCG-GCG- -5'
23927 3' -58.1 NC_005262.1 + 54191 0.67 0.547858
Target:  5'- cUGUcCGAGCGcGUgcuccagCGCCCGcgcGAGCCGg -3'
miRNA:   3'- uACA-GCUCGCaCA-------GCGGGC---UUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 52671 0.67 0.516838
Target:  5'- -cGUCGAGCuUGUgaagcaGCUCGAgcaggaaGGCCGCc -3'
miRNA:   3'- uaCAGCUCGcACAg-----CGGGCU-------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 52633 0.67 0.538485
Target:  5'- -cGUCG-GCGuUGUCGCa--GGGCCGCc -3'
miRNA:   3'- uaCAGCuCGC-ACAGCGggcUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 52201 0.67 0.538485
Target:  5'- --aUCGuGUGgaaGUCGCUCGAgcgcuGGCCGCc -3'
miRNA:   3'- uacAGCuCGCa--CAGCGGGCU-----UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 49716 0.74 0.220079
Target:  5'- cGUGcCGGGCGgcgaaccggCGgCCGAAGCCGCa -3'
miRNA:   3'- -UACaGCUCGCaca------GCgGGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 49567 0.67 0.548903
Target:  5'- cUGcUCGuGCGUGgucgacaucgCGCCCGccgucaguGCCGCg -3'
miRNA:   3'- uAC-AGCuCGCACa---------GCGGGCuu------CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 49215 0.67 0.538485
Target:  5'- uUGUUGGGUGcgGUgCGCgUGAGcGCCGCg -3'
miRNA:   3'- uACAGCUCGCa-CA-GCGgGCUU-CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 48471 0.72 0.282884
Target:  5'- -gGUCGaAGC-UGUUGCUCGAcGGCCGCc -3'
miRNA:   3'- uaCAGC-UCGcACAGCGGGCU-UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.