miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23927 3' -58.1 NC_005262.1 + 8235 0.66 0.580501
Target:  5'- cUGUCG-GCGaa--GCUCGAAGCCGa -3'
miRNA:   3'- uACAGCuCGCacagCGGGCUUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 34738 0.67 0.507667
Target:  5'- -gGUCGAgccgaacacgguGCGcGUCGUgCCGgcGCCGCu -3'
miRNA:   3'- uaCAGCU------------CGCaCAGCG-GGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 52671 0.67 0.516838
Target:  5'- -cGUCGAGCuUGUgaagcaGCUCGAgcaggaaGGCCGCc -3'
miRNA:   3'- uaCAGCUCGcACAg-----CGGGCU-------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 6388 0.67 0.517861
Target:  5'- -gGUCGAGCGUGcUGCCgucguuuuCGAGGUacaGCu -3'
miRNA:   3'- uaCAGCUCGCACaGCGG--------GCUUCGg--CG- -5'
23927 3' -58.1 NC_005262.1 + 41185 0.67 0.528136
Target:  5'- -cG-CGAucGCGUGcgCGCCCGgcGaCCGCu -3'
miRNA:   3'- uaCaGCU--CGCACa-GCGGGCuuC-GGCG- -5'
23927 3' -58.1 NC_005262.1 + 44429 0.67 0.528136
Target:  5'- gAUGgCGAccuCGUGUCGCUCGGcauGCUGCg -3'
miRNA:   3'- -UACaGCUc--GCACAGCGGGCUu--CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 56893 0.67 0.538485
Target:  5'- -gGUCGAGCGcGacaacacgcUCGCCgGcgagaucaAGGCCGCg -3'
miRNA:   3'- uaCAGCUCGCaC---------AGCGGgC--------UUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 33255 0.67 0.538485
Target:  5'- -cGUCGAGCGcuuccUGUCGauCCgCGAGGCguacCGCa -3'
miRNA:   3'- uaCAGCUCGC-----ACAGC--GG-GCUUCG----GCG- -5'
23927 3' -58.1 NC_005262.1 + 54191 0.67 0.547858
Target:  5'- cUGUcCGAGCGcGUgcuccagCGCCCGcgcGAGCCGg -3'
miRNA:   3'- uACA-GCUCGCaCA-------GCGGGC---UUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 54398 0.68 0.497559
Target:  5'- cUGUCGGGCaacGUCGUgCGcAAGCuCGCg -3'
miRNA:   3'- uACAGCUCGca-CAGCGgGC-UUCG-GCG- -5'
23927 3' -58.1 NC_005262.1 + 3318 0.68 0.496553
Target:  5'- gGUG-CGAGCuGUuggucuugcucuuGUCGCUgaugaCGAGGCCGCg -3'
miRNA:   3'- -UACaGCUCG-CA-------------CAGCGG-----GCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 4589 0.68 0.496553
Target:  5'- cUGcUCGGGCGUGagCGCCCGcaggaacGGGCgGUg -3'
miRNA:   3'- uAC-AGCUCGCACa-GCGGGC-------UUCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 54472 0.73 0.236964
Target:  5'- -cGUCGAgGCGcUGcUCGCggugcagCCGAAGCCGCu -3'
miRNA:   3'- uaCAGCU-CGC-AC-AGCG-------GGCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 42919 0.73 0.249857
Target:  5'- -cGUCGucGCGUcGUCGUCCGgcGCgCGCg -3'
miRNA:   3'- uaCAGCu-CGCA-CAGCGGGCuuCG-GCG- -5'
23927 3' -58.1 NC_005262.1 + 1008 0.72 0.26267
Target:  5'- gGUGUaGAGCuUGUCGCCgaucuUGAGGCCGUg -3'
miRNA:   3'- -UACAgCUCGcACAGCGG-----GCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 5901 0.7 0.354113
Target:  5'- gAUGUCGGGCGggagCGCCuucucgaucuccacgCGGAuGCCGCg -3'
miRNA:   3'- -UACAGCUCGCaca-GCGG---------------GCUU-CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 42797 0.69 0.411213
Target:  5'- -cGUCuccGGCGcGUCGCCCGAcGCCa- -3'
miRNA:   3'- uaCAGc--UCGCaCAGCGGGCUuCGGcg -5'
23927 3' -58.1 NC_005262.1 + 62663 0.69 0.411213
Target:  5'- -cGUCGGGgGUGgguuuagucCGCCCGGcGGCgGCa -3'
miRNA:   3'- uaCAGCUCgCACa--------GCGGGCU-UCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 56810 0.68 0.467802
Target:  5'- -cGUCGAGCGgcUGgagCGCCUG-AGCuaCGCg -3'
miRNA:   3'- uaCAGCUCGC--ACa--GCGGGCuUCG--GCG- -5'
23927 3' -58.1 NC_005262.1 + 11870 0.68 0.477621
Target:  5'- cUGUCGGcGaCGUGuaUCGCgCGAaagguGGCCGCg -3'
miRNA:   3'- uACAGCU-C-GCAC--AGCGgGCU-----UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.