miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23927 3' -58.1 NC_005262.1 + 62663 0.69 0.411213
Target:  5'- -cGUCGGGgGUGgguuuagucCGCCCGGcGGCgGCa -3'
miRNA:   3'- uaCAGCUCgCACa--------GCGGGCU-UCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 56810 0.68 0.467802
Target:  5'- -cGUCGAGCGgcUGgagCGCCUG-AGCuaCGCg -3'
miRNA:   3'- uaCAGCUCGC--ACa--GCGGGCuUCG--GCG- -5'
23927 3' -58.1 NC_005262.1 + 11870 0.68 0.477621
Target:  5'- cUGUCGGcGaCGUGuaUCGCgCGAaagguGGCCGCg -3'
miRNA:   3'- uACAGCU-C-GCAC--AGCGgGCU-----UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 4589 0.68 0.496553
Target:  5'- cUGcUCGGGCGUGagCGCCCGcaggaacGGGCgGUg -3'
miRNA:   3'- uAC-AGCUCGCACa-GCGGGC-------UUCGgCG- -5'
23927 3' -58.1 NC_005262.1 + 3318 0.68 0.496553
Target:  5'- gGUG-CGAGCuGUuggucuugcucuuGUCGCUgaugaCGAGGCCGCg -3'
miRNA:   3'- -UACaGCUCG-CA-------------CAGCGG-----GCUUCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 54398 0.68 0.497559
Target:  5'- cUGUCGGGCaacGUCGUgCGcAAGCuCGCg -3'
miRNA:   3'- uACAGCUCGca-CAGCGgGC-UUCG-GCG- -5'
23927 3' -58.1 NC_005262.1 + 27957 0.66 0.591125
Target:  5'- ---cUGGGCG-GUCGCggcgCCGAcGCCGCu -3'
miRNA:   3'- uacaGCUCGCaCAGCG----GGCUuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 17249 0.66 0.591125
Target:  5'- -cGUCgcggGAGCGg--CGgCCGgcGCCGCg -3'
miRNA:   3'- uaCAG----CUCGCacaGCgGGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 19988 0.66 0.59006
Target:  5'- cGUGUCGccGCGa-UCGCCCGAAagcuccugcaucuGCUGCa -3'
miRNA:   3'- -UACAGCu-CGCacAGCGGGCUU-------------CGGCG- -5'
23927 3' -58.1 NC_005262.1 + 12668 0.66 0.569918
Target:  5'- -cGUCGAGCGccuUGUCGaCCGgcGCgucgaGCa -3'
miRNA:   3'- uaCAGCUCGC---ACAGCgGGCuuCGg----CG- -5'
23927 3' -58.1 NC_005262.1 + 61113 0.66 0.566752
Target:  5'- --cUCGAGCGUgagcuugcuacggcGgccaggacgcCGCCCGgcGCCGCg -3'
miRNA:   3'- uacAGCUCGCA--------------Ca---------GCGGGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 57338 0.67 0.548903
Target:  5'- -cGUCGAugccgGCGUcUCG-CCGGAGCCGa -3'
miRNA:   3'- uaCAGCU-----CGCAcAGCgGGCUUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 31086 0.66 0.591125
Target:  5'- -cGcCGAGCucgaugaUGUCGCCCaccugGAGGCCGg -3'
miRNA:   3'- uaCaGCUCGc------ACAGCGGG-----CUUCGGCg -5'
23927 3' -58.1 NC_005262.1 + 58180 0.66 0.591125
Target:  5'- --cUCGGGCGagGUCGCgaacaUCGAcGCCGCc -3'
miRNA:   3'- uacAGCUCGCa-CAGCG-----GGCUuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 32493 0.66 0.591125
Target:  5'- --aUCG-GCGgacagacccauUGUCGCCgCGAucuuGGCCGCg -3'
miRNA:   3'- uacAGCuCGC-----------ACAGCGG-GCU----UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 46380 0.66 0.595383
Target:  5'- -gGUCGuccAGCGUGgCGCCCaGcgucucggcauugucGGCCGCc -3'
miRNA:   3'- uaCAGC---UCGCACaGCGGGcU---------------UCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 2638 0.66 0.601781
Target:  5'- -cGUC-AGC---UCGCCCGccGCCGCg -3'
miRNA:   3'- uaCAGcUCGcacAGCGGGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 21520 0.66 0.601781
Target:  5'- -cGUCGccGGUgcccGUGcCGCUCGucGCCGCa -3'
miRNA:   3'- uaCAGC--UCG----CACaGCGGGCuuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 19067 0.66 0.612461
Target:  5'- -aGUCGAGauaGUCGCggCCGA-GCUGCa -3'
miRNA:   3'- uaCAGCUCgcaCAGCG--GGCUuCGGCG- -5'
23927 3' -58.1 NC_005262.1 + 29575 1.1 0.000551
Target:  5'- cAUGUCGAGCGUGUCGCCCGAAGCCGCg -3'
miRNA:   3'- -UACAGCUCGCACAGCGGGCUUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.