miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23928 5' -54.6 NC_005262.1 + 38450 0.67 0.760519
Target:  5'- cGGaCGAcGgCACGCUcgUCGCCGuAUCCu -3'
miRNA:   3'- uCC-GCUuCgGUGUGGa-AGUGGC-UAGG- -5'
23928 5' -54.6 NC_005262.1 + 60279 0.67 0.760519
Target:  5'- gGGGUGGauAGCgGgaaccCACCguaaGCCGAUCCg -3'
miRNA:   3'- -UCCGCU--UCGgU-----GUGGaag-UGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 39452 0.67 0.760519
Target:  5'- cAGGCGcgccgacgcaGAGCCGCAUgUcgaucgCGCCGA-CCa -3'
miRNA:   3'- -UCCGC----------UUCGGUGUGgAa-----GUGGCUaGG- -5'
23928 5' -54.6 NC_005262.1 + 58733 0.67 0.75029
Target:  5'- -cGCGccGCCGCcgcggGCCUgccCGCCGAUCa -3'
miRNA:   3'- ucCGCuuCGGUG-----UGGAa--GUGGCUAGg -5'
23928 5' -54.6 NC_005262.1 + 52747 0.67 0.75029
Target:  5'- cAGGCGAcGCUGCgGCCUguugcugCGCgCGGUCUu -3'
miRNA:   3'- -UCCGCUuCGGUG-UGGAa------GUG-GCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 48153 0.67 0.75029
Target:  5'- aAGGCGAGggggauGCCcgACGCgUUCAgCCGcgCCu -3'
miRNA:   3'- -UCCGCUU------CGG--UGUGgAAGU-GGCuaGG- -5'
23928 5' -54.6 NC_005262.1 + 47804 0.67 0.75029
Target:  5'- cGGU---GCCGCGCUgcaCGCCGAUCUc -3'
miRNA:   3'- uCCGcuuCGGUGUGGaa-GUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 56004 0.67 0.75029
Target:  5'- aAGGCGcucGAGCaGCGCa-UCACCgcGAUCCg -3'
miRNA:   3'- -UCCGC---UUCGgUGUGgaAGUGG--CUAGG- -5'
23928 5' -54.6 NC_005262.1 + 49497 0.67 0.739942
Target:  5'- cGGCGguGCgCGCAgCgcgaUCGCCGAgggCCu -3'
miRNA:   3'- uCCGCuuCG-GUGUgGa---AGUGGCUa--GG- -5'
23928 5' -54.6 NC_005262.1 + 45786 0.67 0.739942
Target:  5'- cGGCGAagGGCgGCGgCgu-GCUGAUCCa -3'
miRNA:   3'- uCCGCU--UCGgUGUgGaagUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 28700 0.67 0.739942
Target:  5'- aAGGCGAcGCCACGCag-CAgCGAg-- -3'
miRNA:   3'- -UCCGCUuCGGUGUGgaaGUgGCUagg -5'
23928 5' -54.6 NC_005262.1 + 58989 0.67 0.739942
Target:  5'- cGGCGAAaccagcGCUACgcgGCCggCuCCGAUCCc -3'
miRNA:   3'- uCCGCUU------CGGUG---UGGaaGuGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 49781 0.67 0.737859
Target:  5'- cGGcCGcuGCCGCGCCggacgccccugCACCG-UCCg -3'
miRNA:   3'- uCC-GCuuCGGUGUGGaa---------GUGGCuAGG- -5'
23928 5' -54.6 NC_005262.1 + 33277 0.67 0.73368
Target:  5'- -cGCGAGGCguaccgcaucgcgcgCACGCCgggCGCCGAagCCg -3'
miRNA:   3'- ucCGCUUCG---------------GUGUGGaa-GUGGCUa-GG- -5'
23928 5' -54.6 NC_005262.1 + 33739 0.67 0.73368
Target:  5'- aAGGCGAAGCU-CGCCgaaggCgcugcguaacgccauGCCGAUCg -3'
miRNA:   3'- -UCCGCUUCGGuGUGGaa---G---------------UGGCUAGg -5'
23928 5' -54.6 NC_005262.1 + 35875 0.67 0.729486
Target:  5'- cGGCGAcGCgCGCACCUaUCgGCUcAUCCa -3'
miRNA:   3'- uCCGCUuCG-GUGUGGA-AG-UGGcUAGG- -5'
23928 5' -54.6 NC_005262.1 + 30117 0.67 0.718935
Target:  5'- -cGCGAAGCCcacgaucgugccGCugCUggUCGCCGAagcgCCg -3'
miRNA:   3'- ucCGCUUCGG------------UGugGA--AGUGGCUa---GG- -5'
23928 5' -54.6 NC_005262.1 + 62 0.67 0.718935
Target:  5'- cGGgGAGGCCGCGgCUcgcgaagaagUCGgCCGcgCCg -3'
miRNA:   3'- uCCgCUUCGGUGUgGA----------AGU-GGCuaGG- -5'
23928 5' -54.6 NC_005262.1 + 58182 0.67 0.708299
Target:  5'- cGGGCGAGGUCGCGaa--CAUCGAcgCCg -3'
miRNA:   3'- -UCCGCUUCGGUGUggaaGUGGCUa-GG- -5'
23928 5' -54.6 NC_005262.1 + 31737 0.68 0.69759
Target:  5'- cGGCGGucgcauGUCGCGCaagCGCaCGGUCCa -3'
miRNA:   3'- uCCGCUu-----CGGUGUGgaaGUG-GCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.