miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23929 5' -52.2 NC_005262.1 + 61118 0.66 0.89455
Target:  5'- gCGUGAGC--UUGCUaCGGCGGCcagGAc -3'
miRNA:   3'- -GCACUUGcaGACGAaGCCGUCGua-CU- -5'
23929 5' -52.2 NC_005262.1 + 60381 0.66 0.89455
Target:  5'- --cGAAgGUCgccgGCcgcaagaucgUCGGCGGCAUGGc -3'
miRNA:   3'- gcaCUUgCAGa---CGa---------AGCCGUCGUACU- -5'
23929 5' -52.2 NC_005262.1 + 33985 0.66 0.876495
Target:  5'- -cUGGACGUCgUGCguaacaugggcgCGGaCGGCGUGAc -3'
miRNA:   3'- gcACUUGCAG-ACGaa----------GCC-GUCGUACU- -5'
23929 5' -52.2 NC_005262.1 + 28626 0.66 0.869335
Target:  5'- uCGUGAccucauugccgccaGCGUCgcccGgaUCGGCGGUAUGc -3'
miRNA:   3'- -GCACU--------------UGCAGa---CgaAGCCGUCGUACu -5'
23929 5' -52.2 NC_005262.1 + 32890 0.67 0.846643
Target:  5'- gCGUcGAACGUCgGCcaagcCGGCGGCGUc- -3'
miRNA:   3'- -GCA-CUUGCAGaCGaa---GCCGUCGUAcu -5'
23929 5' -52.2 NC_005262.1 + 36590 0.67 0.828737
Target:  5'- uGUGAGCGUgaagcGCUUCGGC-GCAa-- -3'
miRNA:   3'- gCACUUGCAga---CGAAGCCGuCGUacu -5'
23929 5' -52.2 NC_005262.1 + 10552 0.67 0.828737
Target:  5'- gGUcGAugGUCUugGCgaagaaguagUCGuGCAGCAUGAa -3'
miRNA:   3'- gCA-CUugCAGA--CGa---------AGC-CGUCGUACU- -5'
23929 5' -52.2 NC_005262.1 + 49639 0.68 0.819459
Target:  5'- gGUGGccucgcgaucgGCGgcCUGCaaggCGGCGGCAUGGg -3'
miRNA:   3'- gCACU-----------UGCa-GACGaa--GCCGUCGUACU- -5'
23929 5' -52.2 NC_005262.1 + 61028 0.68 0.81852
Target:  5'- ---aGACGUCUGCUaaccgcaaccacuUCGGCAGCcaGAu -3'
miRNA:   3'- gcacUUGCAGACGA-------------AGCCGUCGuaCU- -5'
23929 5' -52.2 NC_005262.1 + 31928 0.68 0.809979
Target:  5'- --cGGACGUCgccaccUGCUguaCGGCGGUGUGGc -3'
miRNA:   3'- gcaCUUGCAG------ACGAa--GCCGUCGUACU- -5'
23929 5' -52.2 NC_005262.1 + 23391 0.68 0.77025
Target:  5'- aCGUGAagcgccacaagGCGgcgaUGCggCgGGCAGCAUGAg -3'
miRNA:   3'- -GCACU-----------UGCag--ACGaaG-CCGUCGUACU- -5'
23929 5' -52.2 NC_005262.1 + 18651 0.68 0.77025
Target:  5'- gGUGGACGUgaGCa---GCGGCAUGAa -3'
miRNA:   3'- gCACUUGCAgaCGaagcCGUCGUACU- -5'
23929 5' -52.2 NC_005262.1 + 41999 0.71 0.628885
Target:  5'- -uUGAGCGUCaGCUUCGGgucgAGCAUGc -3'
miRNA:   3'- gcACUUGCAGaCGAAGCCg---UCGUACu -5'
23929 5' -52.2 NC_005262.1 + 17242 0.72 0.573298
Target:  5'- uCGUGGGCGUC-GCgggagCGGCGGCcgGc -3'
miRNA:   3'- -GCACUUGCAGaCGaa---GCCGUCGuaCu -5'
23929 5' -52.2 NC_005262.1 + 49394 0.72 0.540467
Target:  5'- cCGcGGGCGUCgcaacugGUcugUUCGGCGGCAUGGg -3'
miRNA:   3'- -GCaCUUGCAGa------CG---AAGCCGUCGUACU- -5'
23929 5' -52.2 NC_005262.1 + 28893 1.1 0.002026
Target:  5'- cCGUGAACGUCUGCUUCGGCAGCAUGAg -3'
miRNA:   3'- -GCACUUGCAGACGAAGCCGUCGUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.