miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23930 5' -60.4 NC_005262.1 + 16641 0.66 0.551123
Target:  5'- aGUGgUGcGCgCCUCGCCGGucgcGUCGACCu -3'
miRNA:   3'- -CGUgGC-CGgGGGGUGGCUu---CAGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 18401 0.66 0.551123
Target:  5'- cGCACCGGCUUCCgagCGCCucaauGAGcgCGACUu -3'
miRNA:   3'- -CGUGGCCGGGGG---GUGGc----UUCa-GCUGG- -5'
23930 5' -60.4 NC_005262.1 + 46547 0.66 0.551123
Target:  5'- gGCGCCGGCCgccgcUCCCGCgacgcccaCGA---CGACCa -3'
miRNA:   3'- -CGUGGCCGG-----GGGGUG--------GCUucaGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 11420 0.66 0.551123
Target:  5'- cGCGCCGGg---CCGCCGAAGgugcgCGACa -3'
miRNA:   3'- -CGUGGCCggggGGUGGCUUCa----GCUGg -5'
23930 5' -60.4 NC_005262.1 + 2625 0.66 0.551123
Target:  5'- aGCGCCGcgcGCCCgucagcucgCCCGCCGccG-CGAUCu -3'
miRNA:   3'- -CGUGGC---CGGG---------GGGUGGCuuCaGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 51373 0.66 0.551123
Target:  5'- cGCAUCGGCUCggCUACCGuc-UCGAUCg -3'
miRNA:   3'- -CGUGGCCGGGg-GGUGGCuucAGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 60767 0.66 0.550109
Target:  5'- gGCGCCGGCUCaacggcuUCCGCCGGAucaUGugCa -3'
miRNA:   3'- -CGUGGCCGGG-------GGGUGGCUUca-GCugG- -5'
23930 5' -60.4 NC_005262.1 + 15254 0.66 0.541008
Target:  5'- gGC-CCGGCUCCUgcgCAUCGAgacgcgauugcaGGUCGAgCg -3'
miRNA:   3'- -CGuGGCCGGGGG---GUGGCU------------UCAGCUgG- -5'
23930 5' -60.4 NC_005262.1 + 48039 0.66 0.541008
Target:  5'- aGCAgCCGGCCgCgCCCGCaagcgCGucGGUCGcACCu -3'
miRNA:   3'- -CGU-GGCCGG-G-GGGUG-----GCu-UCAGC-UGG- -5'
23930 5' -60.4 NC_005262.1 + 11328 0.66 0.541008
Target:  5'- -aAUCGGCCCUCCuCCGcAAGaCG-CCg -3'
miRNA:   3'- cgUGGCCGGGGGGuGGC-UUCaGCuGG- -5'
23930 5' -60.4 NC_005262.1 + 16874 0.66 0.541008
Target:  5'- gGCGcCCGGCCgCgCGCCG-GGcCGcACCa -3'
miRNA:   3'- -CGU-GGCCGGgGgGUGGCuUCaGC-UGG- -5'
23930 5' -60.4 NC_005262.1 + 26538 0.66 0.541008
Target:  5'- -gACCGGCggCCacuCCGAAG-CGGCCg -3'
miRNA:   3'- cgUGGCCGggGGgu-GGCUUCaGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 22234 0.66 0.530957
Target:  5'- -gGCCGcGCCgCCCaCGCCGGc--CGGCCu -3'
miRNA:   3'- cgUGGC-CGG-GGG-GUGGCUucaGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 19454 0.66 0.530957
Target:  5'- gGCGuuGGCCUcgaugCUCACCGGA--CGGCCc -3'
miRNA:   3'- -CGUggCCGGG-----GGGUGGCUUcaGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 60196 0.66 0.530957
Target:  5'- gGCaACCGGCaaggagCCggCCGgCGAGGUCGGCa -3'
miRNA:   3'- -CG-UGGCCGg-----GG--GGUgGCUUCAGCUGg -5'
23930 5' -60.4 NC_005262.1 + 14568 0.66 0.530957
Target:  5'- cGCGCgCGGaCUgcgCgCCGCCGAGGccgcccUCGGCCa -3'
miRNA:   3'- -CGUG-GCC-GG---GgGGUGGCUUC------AGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 54674 0.66 0.524959
Target:  5'- gGCGCCGGUCCUcauagCCGCUGcgguucagcguucccGAGccuuUCGGCCu -3'
miRNA:   3'- -CGUGGCCGGGG-----GGUGGC---------------UUC----AGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 10292 0.66 0.520974
Target:  5'- -gGCCGGCCCCUgCGgCGucugcacuUCGGCCg -3'
miRNA:   3'- cgUGGCCGGGGG-GUgGCuuc-----AGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 3682 0.66 0.520974
Target:  5'- aCGCUGGCgCCCUCGugcCCGAccauGUUGAUCg -3'
miRNA:   3'- cGUGGCCG-GGGGGU---GGCUu---CAGCUGG- -5'
23930 5' -60.4 NC_005262.1 + 31085 0.66 0.520974
Target:  5'- aCGCCGaGCUCgaugaugucgCCCACCuGGAGgccggCGGCCg -3'
miRNA:   3'- cGUGGC-CGGG----------GGGUGG-CUUCa----GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.