Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 9241 | 0.66 | 0.498731 |
Target: 5'- cUCGCGAaCGCGgCGacGUCGCuGGCCGg- -3' miRNA: 3'- -AGCGUUgGCGCgGU--CAGUG-CCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 23152 | 0.66 | 0.498731 |
Target: 5'- gUCGCugacGCCGUGCCcguGGcCGgGGUCGUUg -3' miRNA: 3'- -AGCGu---UGGCGCGG---UCaGUgCCGGCAA- -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 13863 | 0.66 | 0.498731 |
Target: 5'- aCGCcauCCGgGCCGGUCGucaGGCgGUa -3' miRNA: 3'- aGCGuu-GGCgCGGUCAGUg--CCGgCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 757 | 0.66 | 0.497728 |
Target: 5'- gCGCAugCuggacuuGCGCCAGUUGCcgauGCCGUa -3' miRNA: 3'- aGCGUugG-------CGCGGUCAGUGc---CGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 33922 | 0.66 | 0.498731 |
Target: 5'- -aGCGGCgGUGCCgAGcUCGCGGCgGg- -3' miRNA: 3'- agCGUUGgCGCGG-UC-AGUGCCGgCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 55057 | 0.67 | 0.44789 |
Target: 5'- aUCGCGACgggcauggaggaGCGCCGG-CugGGCCu-- -3' miRNA: 3'- -AGCGUUGg-----------CGCGGUCaGugCCGGcaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 47708 | 0.67 | 0.449793 |
Target: 5'- -aGC-ACCGCGCCGGgcgGCGGCuCGc- -3' miRNA: 3'- agCGuUGGCGCGGUCag-UGCCG-GCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 43819 | 0.67 | 0.469062 |
Target: 5'- aUCGCGgcgacacgGCCGCggGCCGGccgcgCGCGGCgGUg -3' miRNA: 3'- -AGCGU--------UGGCG--CGGUCa----GUGCCGgCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 22214 | 0.67 | 0.472966 |
Target: 5'- cUCGCGcucgacaagcucacgGCCGCGCCGccCAcgcCGGCCGg- -3' miRNA: 3'- -AGCGU---------------UGGCGCGGUcaGU---GCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 51620 | 0.67 | 0.459374 |
Target: 5'- uUUGCuccuGCCGCGCagaCAG-CGCGGCCu-- -3' miRNA: 3'- -AGCGu---UGGCGCG---GUCaGUGCCGGcaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 49784 | 0.67 | 0.418981 |
Target: 5'- cCGCuGCCGCGCCGgacgccccugcaccGUC-CGGCCc-- -3' miRNA: 3'- aGCGuUGGCGCGGU--------------CAGuGCCGGcaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 40349 | 0.67 | 0.459374 |
Target: 5'- cCGCGcaUGCGCCAGUCgucggACGGCuCGa- -3' miRNA: 3'- aGCGUugGCGCGGUCAG-----UGCCG-GCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 3294 | 0.67 | 0.459374 |
Target: 5'- -gGCGGCCuGCGCCg--CGCGGCCc-- -3' miRNA: 3'- agCGUUGG-CGCGGucaGUGCCGGcaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 46708 | 0.67 | 0.459374 |
Target: 5'- cUCGCGGCC-CGCCGcGUCgACGGgCGc- -3' miRNA: 3'- -AGCGUUGGcGCGGU-CAG-UGCCgGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 15451 | 0.67 | 0.456488 |
Target: 5'- -aGCAgcGCCGgGUCGGUCGugccgagcuucuucUGGCCGUa -3' miRNA: 3'- agCGU--UGGCgCGGUCAGU--------------GCCGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 29489 | 0.67 | 0.449793 |
Target: 5'- -gGCGACCGUGCCGuUCGCGaacucGCUGUc -3' miRNA: 3'- agCGUUGGCGCGGUcAGUGC-----CGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 56920 | 0.67 | 0.440323 |
Target: 5'- aCGCGAUCGCgGCCGG-CAUcGCCGa- -3' miRNA: 3'- aGCGUUGGCG-CGGUCaGUGcCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 63708 | 0.67 | 0.440323 |
Target: 5'- gCGCAGaaGCGUgCGG-CGCGGCCGa- -3' miRNA: 3'- aGCGUUggCGCG-GUCaGUGCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 25269 | 0.67 | 0.440323 |
Target: 5'- cCGCGACCGUG-UAGcUCuugcCGGCCGUg -3' miRNA: 3'- aGCGUUGGCGCgGUC-AGu---GCCGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 58711 | 0.67 | 0.440323 |
Target: 5'- gCGCAccGCCGaGCCGGUCgcACGcGCCGc- -3' miRNA: 3'- aGCGU--UGGCgCGGUCAG--UGC-CGGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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