Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 26979 | 1.06 | 0.000698 |
Target: 5'- gUCGCAACCGCGCCAGUCACGGCCGUUg -3' miRNA: 3'- -AGCGUUGGCGCGGUCAGUGCCGGCAA- -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 10734 | 0.82 | 0.045575 |
Target: 5'- uUCGCGAUCGCGCCGGUCAgCGcGUCGUa -3' miRNA: 3'- -AGCGUUGGCGCGGUCAGU-GC-CGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 42148 | 0.79 | 0.067593 |
Target: 5'- aCGCGgcGCCGgGcCCGGUCGCGGCCGa- -3' miRNA: 3'- aGCGU--UGGCgC-GGUCAGUGCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 54898 | 0.76 | 0.111222 |
Target: 5'- aUCGC-GCCGCGCCAGUUcgACGGCuCGc- -3' miRNA: 3'- -AGCGuUGGCGCGGUCAG--UGCCG-GCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 17189 | 0.75 | 0.138146 |
Target: 5'- aCGCGACCGCGuUCAG-CAaGGCCGUUa -3' miRNA: 3'- aGCGUUGGCGC-GGUCaGUgCCGGCAA- -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 45245 | 0.73 | 0.194817 |
Target: 5'- gUCGCGaaggucaucaACCGUGCCGGUCGgGGCUa-- -3' miRNA: 3'- -AGCGU----------UGGCGCGGUCAGUgCCGGcaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 29165 | 0.73 | 0.19993 |
Target: 5'- gCGCGACCauGCGUCAG--GCGGCCGUc -3' miRNA: 3'- aGCGUUGG--CGCGGUCagUGCCGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 19934 | 0.72 | 0.221565 |
Target: 5'- gCGCGAUCGCGCCgaGGUCcugcCGGCCa-- -3' miRNA: 3'- aGCGUUGGCGCGG--UCAGu---GCCGGcaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 34163 | 0.72 | 0.210508 |
Target: 5'- cUCGCuGCCGaUGCCGGUUGCGGCgUGUUc -3' miRNA: 3'- -AGCGuUGGC-GCGGUCAGUGCCG-GCAA- -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 76 | 0.72 | 0.212681 |
Target: 5'- cUCGCGaagaagucgGCCGCGCCGcacgcuucugcgcauGUCAcCGGCCGg- -3' miRNA: 3'- -AGCGU---------UGGCGCGGU---------------CAGU-GCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 22495 | 0.71 | 0.239074 |
Target: 5'- aUCGC-GCCGCGCCAuaccuugauGUCgcccacgcGCGGCCGa- -3' miRNA: 3'- -AGCGuUGGCGCGGU---------CAG--------UGCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 8138 | 0.71 | 0.245162 |
Target: 5'- uUCGUGACCggcGUGCCGGaCGCGGCCa-- -3' miRNA: 3'- -AGCGUUGG---CGCGGUCaGUGCCGGcaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 50812 | 0.71 | 0.251378 |
Target: 5'- aCGUca-CGCGCgGGUCGCGGUCGUc -3' miRNA: 3'- aGCGuugGCGCGgUCAGUGCCGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 48054 | 0.71 | 0.251378 |
Target: 5'- cCGCAAgCGCGUCGGUCGCaccuGCCGc- -3' miRNA: 3'- aGCGUUgGCGCGGUCAGUGc---CGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 53029 | 0.71 | 0.245162 |
Target: 5'- cCGCGACCa-GCCAGUaCACGGgCGUg -3' miRNA: 3'- aGCGUUGGcgCGGUCA-GUGCCgGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 28169 | 0.71 | 0.257724 |
Target: 5'- gCGCAACUGCGCgCG---GCGGCCGUc -3' miRNA: 3'- aGCGUUGGCGCG-GUcagUGCCGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 50275 | 0.71 | 0.251378 |
Target: 5'- gCGCGcCCGCGCCGgccgagcccGUgACGGCCGc- -3' miRNA: 3'- aGCGUuGGCGCGGU---------CAgUGCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 19963 | 0.71 | 0.239074 |
Target: 5'- cCGCcGCgCGCgGCCGGccCGCGGCCGUg -3' miRNA: 3'- aGCGuUG-GCG-CGGUCa-GUGCCGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 48473 | 0.7 | 0.305844 |
Target: 5'- aUCGCgAGCCGCGUgGG-CACGGgCGg- -3' miRNA: 3'- -AGCG-UUGGCGCGgUCaGUGCCgGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 25730 | 0.7 | 0.313254 |
Target: 5'- -aGCAagAUCGCGCCA---GCGGCCGUg -3' miRNA: 3'- agCGU--UGGCGCGGUcagUGCCGGCAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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