miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23931 3' -59.7 NC_005262.1 + 26979 1.06 0.000698
Target:  5'- gUCGCAACCGCGCCAGUCACGGCCGUUg -3'
miRNA:   3'- -AGCGUUGGCGCGGUCAGUGCCGGCAA- -5'
23931 3' -59.7 NC_005262.1 + 10734 0.82 0.045575
Target:  5'- uUCGCGAUCGCGCCGGUCAgCGcGUCGUa -3'
miRNA:   3'- -AGCGUUGGCGCGGUCAGU-GC-CGGCAa -5'
23931 3' -59.7 NC_005262.1 + 42148 0.79 0.067593
Target:  5'- aCGCGgcGCCGgGcCCGGUCGCGGCCGa- -3'
miRNA:   3'- aGCGU--UGGCgC-GGUCAGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 54898 0.76 0.111222
Target:  5'- aUCGC-GCCGCGCCAGUUcgACGGCuCGc- -3'
miRNA:   3'- -AGCGuUGGCGCGGUCAG--UGCCG-GCaa -5'
23931 3' -59.7 NC_005262.1 + 17189 0.75 0.138146
Target:  5'- aCGCGACCGCGuUCAG-CAaGGCCGUUa -3'
miRNA:   3'- aGCGUUGGCGC-GGUCaGUgCCGGCAA- -5'
23931 3' -59.7 NC_005262.1 + 45245 0.73 0.194817
Target:  5'- gUCGCGaaggucaucaACCGUGCCGGUCGgGGCUa-- -3'
miRNA:   3'- -AGCGU----------UGGCGCGGUCAGUgCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 29165 0.73 0.19993
Target:  5'- gCGCGACCauGCGUCAG--GCGGCCGUc -3'
miRNA:   3'- aGCGUUGG--CGCGGUCagUGCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 34163 0.72 0.210508
Target:  5'- cUCGCuGCCGaUGCCGGUUGCGGCgUGUUc -3'
miRNA:   3'- -AGCGuUGGC-GCGGUCAGUGCCG-GCAA- -5'
23931 3' -59.7 NC_005262.1 + 76 0.72 0.212681
Target:  5'- cUCGCGaagaagucgGCCGCGCCGcacgcuucugcgcauGUCAcCGGCCGg- -3'
miRNA:   3'- -AGCGU---------UGGCGCGGU---------------CAGU-GCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 19934 0.72 0.221565
Target:  5'- gCGCGAUCGCGCCgaGGUCcugcCGGCCa-- -3'
miRNA:   3'- aGCGUUGGCGCGG--UCAGu---GCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 19963 0.71 0.239074
Target:  5'- cCGCcGCgCGCgGCCGGccCGCGGCCGUg -3'
miRNA:   3'- aGCGuUG-GCG-CGGUCa-GUGCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 22495 0.71 0.239074
Target:  5'- aUCGC-GCCGCGCCAuaccuugauGUCgcccacgcGCGGCCGa- -3'
miRNA:   3'- -AGCGuUGGCGCGGU---------CAG--------UGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 53029 0.71 0.245162
Target:  5'- cCGCGACCa-GCCAGUaCACGGgCGUg -3'
miRNA:   3'- aGCGUUGGcgCGGUCA-GUGCCgGCAa -5'
23931 3' -59.7 NC_005262.1 + 8138 0.71 0.245162
Target:  5'- uUCGUGACCggcGUGCCGGaCGCGGCCa-- -3'
miRNA:   3'- -AGCGUUGG---CGCGGUCaGUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 50812 0.71 0.251378
Target:  5'- aCGUca-CGCGCgGGUCGCGGUCGUc -3'
miRNA:   3'- aGCGuugGCGCGgUCAGUGCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 50275 0.71 0.251378
Target:  5'- gCGCGcCCGCGCCGgccgagcccGUgACGGCCGc- -3'
miRNA:   3'- aGCGUuGGCGCGGU---------CAgUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 48054 0.71 0.251378
Target:  5'- cCGCAAgCGCGUCGGUCGCaccuGCCGc- -3'
miRNA:   3'- aGCGUUgGCGCGGUCAGUGc---CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 28169 0.71 0.257724
Target:  5'- gCGCAACUGCGCgCG---GCGGCCGUc -3'
miRNA:   3'- aGCGUUGGCGCG-GUcagUGCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 57146 0.7 0.283727
Target:  5'- aUCGCGGCCGUGUCGGUCGacaucccCGGCg--- -3'
miRNA:   3'- -AGCGUUGGCGCGGUCAGU-------GCCGgcaa -5'
23931 3' -59.7 NC_005262.1 + 41556 0.7 0.298568
Target:  5'- gCGCAgGCCG-GCCGGcgugggcggCGCGGCCGUg -3'
miRNA:   3'- aGCGU-UGGCgCGGUCa--------GUGCCGGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.