Results 21 - 40 of 97 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 29298 | 0.7 | 0.298568 |
Target: 5'- gCGCAuCCGCGCCGugaACGGCCa-- -3' miRNA: 3'- aGCGUuGGCGCGGUcagUGCCGGcaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 48473 | 0.7 | 0.305844 |
Target: 5'- aUCGCgAGCCGCGUgGG-CACGGgCGg- -3' miRNA: 3'- -AGCG-UUGGCGCGgUCaGUGCCgGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 63453 | 0.7 | 0.313254 |
Target: 5'- -aGCAGCCGgaGCCGGUCACuGUCGc- -3' miRNA: 3'- agCGUUGGCg-CGGUCAGUGcCGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 25730 | 0.7 | 0.313254 |
Target: 5'- -aGCAagAUCGCGCCA---GCGGCCGUg -3' miRNA: 3'- agCGU--UGGCGCGGUcagUGCCGGCAa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 19097 | 0.69 | 0.32004 |
Target: 5'- aUGCAGCCaCGCCGucaccaacggcuuGUCGCGGUCGg- -3' miRNA: 3'- aGCGUUGGcGCGGU-------------CAGUGCCGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 35000 | 0.69 | 0.320801 |
Target: 5'- gCGCGGgCGCGa-GGUCACGGUCGa- -3' miRNA: 3'- aGCGUUgGCGCggUCAGUGCCGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 53242 | 0.69 | 0.320801 |
Target: 5'- cUGCGGCUGCgcgcgGCCGGUCGCGucggcauaGCCGUUu -3' miRNA: 3'- aGCGUUGGCG-----CGGUCAGUGC--------CGGCAA- -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 13534 | 0.69 | 0.320801 |
Target: 5'- gCGCGGgCGCGCCcucGUUGCGGCgGUc -3' miRNA: 3'- aGCGUUgGCGCGGu--CAGUGCCGgCAa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 43876 | 0.69 | 0.328482 |
Target: 5'- gCGCGAUCGCGCg---CAUGGCCGa- -3' miRNA: 3'- aGCGUUGGCGCGgucaGUGCCGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 55759 | 0.69 | 0.34425 |
Target: 5'- aCGCGcGCUGCGUCAGUCcugacGCGaGCCGg- -3' miRNA: 3'- aGCGU-UGGCGCGGUCAG-----UGC-CGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 55651 | 0.69 | 0.34425 |
Target: 5'- cUCGUGGCCGCGuCCGG-CAC-GCCGg- -3' miRNA: 3'- -AGCGUUGGCGC-GGUCaGUGcCGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 15746 | 0.69 | 0.34425 |
Target: 5'- gUGCGACCGaCGCgcuugCGGgCGCGGCCGg- -3' miRNA: 3'- aGCGUUGGC-GCG-----GUCaGUGCCGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 11034 | 0.69 | 0.34425 |
Target: 5'- gCGCAagACCGCGCgCAG-CAacaGGCCGc- -3' miRNA: 3'- aGCGU--UGGCGCG-GUCaGUg--CCGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 63271 | 0.69 | 0.34425 |
Target: 5'- -gGCAGCCGcCGCCuGcuUgACGGCCGg- -3' miRNA: 3'- agCGUUGGC-GCGGuC--AgUGCCGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 33329 | 0.69 | 0.34425 |
Target: 5'- aCGCAACUGCGUCGcugCGCGGCacCGUg -3' miRNA: 3'- aGCGUUGGCGCGGUca-GUGCCG--GCAa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 10700 | 0.69 | 0.351521 |
Target: 5'- gCGCAgaucgagGCCGCGCgCA--CGCGGCCGg- -3' miRNA: 3'- aGCGU-------UGGCGCG-GUcaGUGCCGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 40438 | 0.69 | 0.352335 |
Target: 5'- uUCGCcGCCGCGCgcuUCAcgcCGGCCGUg -3' miRNA: 3'- -AGCGuUGGCGCGgucAGU---GCCGGCAa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 10493 | 0.69 | 0.352335 |
Target: 5'- -aGCAGCaGCGCCAGcaUgGCGGCCa-- -3' miRNA: 3'- agCGUUGgCGCGGUC--AgUGCCGGcaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 14168 | 0.69 | 0.352335 |
Target: 5'- aUCGCGagGCCaccgaGCGCCugguuagcgacGUCGCGGCCGa- -3' miRNA: 3'- -AGCGU--UGG-----CGCGGu----------CAGUGCCGGCaa -5' |
|||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 47442 | 0.69 | 0.360555 |
Target: 5'- aCGCGGCgGCGCCGaUCAgCGcGCCGa- -3' miRNA: 3'- aGCGUUGgCGCGGUcAGU-GC-CGGCaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home