miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23931 3' -59.7 NC_005262.1 + 25742 0.66 0.478854
Target:  5'- aUCGCGcagGCCGgcaaGCCGcUCACGGCCc-- -3'
miRNA:   3'- -AGCGU---UGGCg---CGGUcAGUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 12271 0.66 0.478854
Target:  5'- gUCGCcguGuuGCGCaCGGUCgucucgccguuGCGGCCGa- -3'
miRNA:   3'- -AGCGu--UggCGCG-GUCAG-----------UGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 2015 0.66 0.478854
Target:  5'- -gGCGAaaaCGCGCUGGUCGguCGGCgCGUg -3'
miRNA:   3'- agCGUUg--GCGCGGUCAGU--GCCG-GCAa -5'
23931 3' -59.7 NC_005262.1 + 53600 0.66 0.478854
Target:  5'- uUCGCAACCGCGUCGccgCuCGGCagGUa -3'
miRNA:   3'- -AGCGUUGGCGCGGUca-GuGCCGg-CAa -5'
23931 3' -59.7 NC_005262.1 + 50970 0.66 0.478854
Target:  5'- cCGCGagGCCGCGCUccuucuUCACGcGCCGg- -3'
miRNA:   3'- aGCGU--UGGCGCGGuc----AGUGC-CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 22214 0.67 0.472966
Target:  5'- cUCGCGcucgacaagcucacgGCCGCGCCGccCAcgcCGGCCGg- -3'
miRNA:   3'- -AGCGU---------------UGGCGCGGUcaGU---GCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 43819 0.67 0.469062
Target:  5'- aUCGCGgcgacacgGCCGCggGCCGGccgcgCGCGGCgGUg -3'
miRNA:   3'- -AGCGU--------UGGCG--CGGUCa----GUGCCGgCAa -5'
23931 3' -59.7 NC_005262.1 + 40349 0.67 0.459374
Target:  5'- cCGCGcaUGCGCCAGUCgucggACGGCuCGa- -3'
miRNA:   3'- aGCGUugGCGCGGUCAG-----UGCCG-GCaa -5'
23931 3' -59.7 NC_005262.1 + 51620 0.67 0.459374
Target:  5'- uUUGCuccuGCCGCGCagaCAG-CGCGGCCu-- -3'
miRNA:   3'- -AGCGu---UGGCGCG---GUCaGUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 46708 0.67 0.459374
Target:  5'- cUCGCGGCC-CGCCGcGUCgACGGgCGc- -3'
miRNA:   3'- -AGCGUUGGcGCGGU-CAG-UGCCgGCaa -5'
23931 3' -59.7 NC_005262.1 + 3294 0.67 0.459374
Target:  5'- -gGCGGCCuGCGCCg--CGCGGCCc-- -3'
miRNA:   3'- agCGUUGG-CGCGGucaGUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 15451 0.67 0.456488
Target:  5'- -aGCAgcGCCGgGUCGGUCGugccgagcuucuucUGGCCGUa -3'
miRNA:   3'- agCGU--UGGCgCGGUCAGU--------------GCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 29489 0.67 0.449793
Target:  5'- -gGCGACCGUGCCGuUCGCGaacucGCUGUc -3'
miRNA:   3'- agCGUUGGCGCGGUcAGUGC-----CGGCAa -5'
23931 3' -59.7 NC_005262.1 + 47708 0.67 0.449793
Target:  5'- -aGC-ACCGCGCCGGgcgGCGGCuCGc- -3'
miRNA:   3'- agCGuUGGCGCGGUCag-UGCCG-GCaa -5'
23931 3' -59.7 NC_005262.1 + 55057 0.67 0.44789
Target:  5'- aUCGCGACgggcauggaggaGCGCCGG-CugGGCCu-- -3'
miRNA:   3'- -AGCGUUGg-----------CGCGGUCaGugCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 58711 0.67 0.440323
Target:  5'- gCGCAccGCCGaGCCGGUCgcACGcGCCGc- -3'
miRNA:   3'- aGCGU--UGGCgCGGUCAG--UGC-CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 25269 0.67 0.440323
Target:  5'- cCGCGACCGUG-UAGcUCuugcCGGCCGUg -3'
miRNA:   3'- aGCGUUGGCGCgGUC-AGu---GCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 63708 0.67 0.440323
Target:  5'- gCGCAGaaGCGUgCGG-CGCGGCCGa- -3'
miRNA:   3'- aGCGUUggCGCG-GUCaGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 56920 0.67 0.440323
Target:  5'- aCGCGAUCGCgGCCGG-CAUcGCCGa- -3'
miRNA:   3'- aGCGUUGGCG-CGGUCaGUGcCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 56611 0.67 0.430967
Target:  5'- aUGCAAUCGCGCCgcaauuacgcGGUagcggcauGCGGCCGg- -3'
miRNA:   3'- aGCGUUGGCGCGG----------UCAg-------UGCCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.