miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23931 3' -59.7 NC_005262.1 + 29280 0.67 0.430967
Target:  5'- aCGCcacAGCCGCGUCgucucgcagaAGUCGCGcGCCGc- -3'
miRNA:   3'- aGCG---UUGGCGCGG----------UCAGUGC-CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 58617 0.67 0.421729
Target:  5'- cCGCGcCCGCGCCcgcGaCGcCGGCCGUc -3'
miRNA:   3'- aGCGUuGGCGCGGu--CaGU-GCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 49784 0.67 0.418981
Target:  5'- cCGCuGCCGCGCCGgacgccccugcaccGUC-CGGCCc-- -3'
miRNA:   3'- aGCGuUGGCGCGGU--------------CAGuGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 17562 0.68 0.412612
Target:  5'- -gGCAGCCGCGgCGGcgCGCGaaGCCGa- -3'
miRNA:   3'- agCGUUGGCGCgGUCa-GUGC--CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 24571 0.68 0.403617
Target:  5'- aUCGCGuCCGuCGCCGuGUCGCGGUg--- -3'
miRNA:   3'- -AGCGUuGGC-GCGGU-CAGUGCCGgcaa -5'
23931 3' -59.7 NC_005262.1 + 22032 0.68 0.403617
Target:  5'- cUCGUGcGCUGCGCCGGugccggcauUCugGGUCGUg -3'
miRNA:   3'- -AGCGU-UGGCGCGGUC---------AGugCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 50445 0.68 0.403617
Target:  5'- gUCGUcguGCCGCGCgAGgaggACGGCCGc- -3'
miRNA:   3'- -AGCGu--UGGCGCGgUCag--UGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 24825 0.68 0.394747
Target:  5'- cUCGCGAUCGCgGCCGG-CGcCGuGCCGa- -3'
miRNA:   3'- -AGCGUUGGCG-CGGUCaGU-GC-CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 13419 0.68 0.393867
Target:  5'- uUCGCGucGCCacggucgacgaauGCGCCGcUCGCGGUCGUc -3'
miRNA:   3'- -AGCGU--UGG-------------CGCGGUcAGUGCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 14621 0.68 0.386004
Target:  5'- aUCGcCGugCGCGCCGcu-GCGGCCGa- -3'
miRNA:   3'- -AGC-GUugGCGCGGUcagUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 40324 0.68 0.386004
Target:  5'- -gGCGACCGCuucgaGCauCGGcUCACGGCCGg- -3'
miRNA:   3'- agCGUUGGCG-----CG--GUC-AGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 45413 0.68 0.386004
Target:  5'- -gGCAGCCGCGCaaaacuCGGCCGg- -3'
miRNA:   3'- agCGUUGGCGCGgucaguGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 46027 0.68 0.385137
Target:  5'- gUCGCGcuGCCGCGCUacuacgaAGUCAUGcGCgCGUc -3'
miRNA:   3'- -AGCGU--UGGCGCGG-------UCAGUGC-CG-GCAa -5'
23931 3' -59.7 NC_005262.1 + 53592 0.68 0.37739
Target:  5'- -aGCAuguACCGCGCaaacgAGUaCACGGUCGUUc -3'
miRNA:   3'- agCGU---UGGCGCGg----UCA-GUGCCGGCAA- -5'
23931 3' -59.7 NC_005262.1 + 24214 0.68 0.37739
Target:  5'- cCGCGacGCUGCGCCGG-CAC-GCCGa- -3'
miRNA:   3'- aGCGU--UGGCGCGGUCaGUGcCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 47929 0.68 0.368907
Target:  5'- gCGCcAUCGCGUCgaGGUaCAUGGCCGUc -3'
miRNA:   3'- aGCGuUGGCGCGG--UCA-GUGCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 44564 0.69 0.360555
Target:  5'- cUCGcCGGCCGauacgcaGgCAGUCACGGUCGa- -3'
miRNA:   3'- -AGC-GUUGGCg------CgGUCAGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 47442 0.69 0.360555
Target:  5'- aCGCGGCgGCGCCGaUCAgCGcGCCGa- -3'
miRNA:   3'- aGCGUUGgCGCGGUcAGU-GC-CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 10493 0.69 0.352335
Target:  5'- -aGCAGCaGCGCCAGcaUgGCGGCCa-- -3'
miRNA:   3'- agCGUUGgCGCGGUC--AgUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 14168 0.69 0.352335
Target:  5'- aUCGCGagGCCaccgaGCGCCugguuagcgacGUCGCGGCCGa- -3'
miRNA:   3'- -AGCGU--UGG-----CGCGGu----------CAGUGCCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.