miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23931 3' -59.7 NC_005262.1 + 76 0.72 0.212681
Target:  5'- cUCGCGaagaagucgGCCGCGCCGcacgcuucugcgcauGUCAcCGGCCGg- -3'
miRNA:   3'- -AGCGU---------UGGCGCGGU---------------CAGU-GCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 757 0.66 0.497728
Target:  5'- gCGCAugCuggacuuGCGCCAGUUGCcgauGCCGUa -3'
miRNA:   3'- aGCGUugG-------CGCGGUCAGUGc---CGGCAa -5'
23931 3' -59.7 NC_005262.1 + 2015 0.66 0.478854
Target:  5'- -gGCGAaaaCGCGCUGGUCGguCGGCgCGUg -3'
miRNA:   3'- agCGUUg--GCGCGGUCAGU--GCCG-GCAa -5'
23931 3' -59.7 NC_005262.1 + 3294 0.67 0.459374
Target:  5'- -gGCGGCCuGCGCCg--CGCGGCCc-- -3'
miRNA:   3'- agCGUUGG-CGCGGucaGUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 5185 0.66 0.478854
Target:  5'- gUCGCGG--GCGCgGG-CGCGGCCGg- -3'
miRNA:   3'- -AGCGUUggCGCGgUCaGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 6082 0.66 0.508807
Target:  5'- aUGCGGCgCGCGUC-GUgGCGGCCu-- -3'
miRNA:   3'- aGCGUUG-GCGCGGuCAgUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 8138 0.71 0.245162
Target:  5'- uUCGUGACCggcGUGCCGGaCGCGGCCa-- -3'
miRNA:   3'- -AGCGUUGG---CGCGGUCaGUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 9241 0.66 0.498731
Target:  5'- cUCGCGAaCGCGgCGacGUCGCuGGCCGg- -3'
miRNA:   3'- -AGCGUUgGCGCgGU--CAGUG-CCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 10493 0.69 0.352335
Target:  5'- -aGCAGCaGCGCCAGcaUgGCGGCCa-- -3'
miRNA:   3'- agCGUUGgCGCGGUC--AgUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 10517 0.66 0.498731
Target:  5'- -aGCAGCaGCGCgGGg-GCGGCCGa- -3'
miRNA:   3'- agCGUUGgCGCGgUCagUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 10700 0.69 0.351521
Target:  5'- gCGCAgaucgagGCCGCGCgCA--CGCGGCCGg- -3'
miRNA:   3'- aGCGU-------UGGCGCG-GUcaGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 10734 0.82 0.045575
Target:  5'- uUCGCGAUCGCGCCGGUCAgCGcGUCGUa -3'
miRNA:   3'- -AGCGUUGGCGCGGUCAGU-GC-CGGCAa -5'
23931 3' -59.7 NC_005262.1 + 11034 0.69 0.34425
Target:  5'- gCGCAagACCGCGCgCAG-CAacaGGCCGc- -3'
miRNA:   3'- aGCGU--UGGCGCG-GUCaGUg--CCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 11088 0.66 0.518967
Target:  5'- gCGCGGCCuCGuCCGG-CGuCGGCCGg- -3'
miRNA:   3'- aGCGUUGGcGC-GGUCaGU-GCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 12271 0.66 0.478854
Target:  5'- gUCGCcguGuuGCGCaCGGUCgucucgccguuGCGGCCGa- -3'
miRNA:   3'- -AGCGu--UggCGCG-GUCAG-----------UGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 12813 0.66 0.488745
Target:  5'- gCGCAGCCgGCGCguGaagaaggagCGCGGCCu-- -3'
miRNA:   3'- aGCGUUGG-CGCGguCa--------GUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 13419 0.68 0.393867
Target:  5'- uUCGCGucGCCacggucgacgaauGCGCCGcUCGCGGUCGUc -3'
miRNA:   3'- -AGCGU--UGG-------------CGCGGUcAGUGCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 13534 0.69 0.320801
Target:  5'- gCGCGGgCGCGCCcucGUUGCGGCgGUc -3'
miRNA:   3'- aGCGUUgGCGCGGu--CAGUGCCGgCAa -5'
23931 3' -59.7 NC_005262.1 + 13863 0.66 0.498731
Target:  5'- aCGCcauCCGgGCCGGUCGucaGGCgGUa -3'
miRNA:   3'- aGCGuu-GGCgCGGUCAGUg--CCGgCAa -5'
23931 3' -59.7 NC_005262.1 + 14168 0.69 0.352335
Target:  5'- aUCGCGagGCCaccgaGCGCCugguuagcgacGUCGCGGCCGa- -3'
miRNA:   3'- -AGCGU--UGG-----CGCGGu----------CAGUGCCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.