miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23931 3' -59.7 NC_005262.1 + 14621 0.68 0.386004
Target:  5'- aUCGcCGugCGCGCCGcu-GCGGCCGa- -3'
miRNA:   3'- -AGC-GUugGCGCGGUcagUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 15451 0.67 0.456488
Target:  5'- -aGCAgcGCCGgGUCGGUCGugccgagcuucuucUGGCCGUa -3'
miRNA:   3'- agCGU--UGGCgCGGUCAGU--------------GCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 15746 0.69 0.34425
Target:  5'- gUGCGACCGaCGCgcuugCGGgCGCGGCCGg- -3'
miRNA:   3'- aGCGUUGGC-GCG-----GUCaGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 17189 0.75 0.138146
Target:  5'- aCGCGACCGCGuUCAG-CAaGGCCGUUa -3'
miRNA:   3'- aGCGUUGGCGC-GGUCaGUgCCGGCAA- -5'
23931 3' -59.7 NC_005262.1 + 17562 0.68 0.412612
Target:  5'- -gGCAGCCGCGgCGGcgCGCGaaGCCGa- -3'
miRNA:   3'- agCGUUGGCGCgGUCa-GUGC--CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 19097 0.69 0.32004
Target:  5'- aUGCAGCCaCGCCGucaccaacggcuuGUCGCGGUCGg- -3'
miRNA:   3'- aGCGUUGGcGCGGU-------------CAGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 19934 0.72 0.221565
Target:  5'- gCGCGAUCGCGCCgaGGUCcugcCGGCCa-- -3'
miRNA:   3'- aGCGUUGGCGCGG--UCAGu---GCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 19963 0.71 0.239074
Target:  5'- cCGCcGCgCGCgGCCGGccCGCGGCCGUg -3'
miRNA:   3'- aGCGuUG-GCG-CGGUCa-GUGCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 22032 0.68 0.403617
Target:  5'- cUCGUGcGCUGCGCCGGugccggcauUCugGGUCGUg -3'
miRNA:   3'- -AGCGU-UGGCGCGGUC---------AGugCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 22214 0.67 0.472966
Target:  5'- cUCGCGcucgacaagcucacgGCCGCGCCGccCAcgcCGGCCGg- -3'
miRNA:   3'- -AGCGU---------------UGGCGCGGUcaGU---GCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 22495 0.71 0.239074
Target:  5'- aUCGC-GCCGCGCCAuaccuugauGUCgcccacgcGCGGCCGa- -3'
miRNA:   3'- -AGCGuUGGCGCGGU---------CAG--------UGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 23152 0.66 0.498731
Target:  5'- gUCGCugacGCCGUGCCcguGGcCGgGGUCGUUg -3'
miRNA:   3'- -AGCGu---UGGCGCGG---UCaGUgCCGGCAA- -5'
23931 3' -59.7 NC_005262.1 + 24214 0.68 0.37739
Target:  5'- cCGCGacGCUGCGCCGG-CAC-GCCGa- -3'
miRNA:   3'- aGCGU--UGGCGCGGUCaGUGcCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 24571 0.68 0.403617
Target:  5'- aUCGCGuCCGuCGCCGuGUCGCGGUg--- -3'
miRNA:   3'- -AGCGUuGGC-GCGGU-CAGUGCCGgcaa -5'
23931 3' -59.7 NC_005262.1 + 24825 0.68 0.394747
Target:  5'- cUCGCGAUCGCgGCCGG-CGcCGuGCCGa- -3'
miRNA:   3'- -AGCGUUGGCG-CGGUCaGU-GC-CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 25269 0.67 0.440323
Target:  5'- cCGCGACCGUG-UAGcUCuugcCGGCCGUg -3'
miRNA:   3'- aGCGUUGGCGCgGUC-AGu---GCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 25730 0.7 0.313254
Target:  5'- -aGCAagAUCGCGCCA---GCGGCCGUg -3'
miRNA:   3'- agCGU--UGGCGCGGUcagUGCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 25742 0.66 0.478854
Target:  5'- aUCGCGcagGCCGgcaaGCCGcUCACGGCCc-- -3'
miRNA:   3'- -AGCGU---UGGCg---CGGUcAGUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 26979 1.06 0.000698
Target:  5'- gUCGCAACCGCGCCAGUCACGGCCGUUg -3'
miRNA:   3'- -AGCGUUGGCGCGGUCAGUGCCGGCAA- -5'
23931 3' -59.7 NC_005262.1 + 28169 0.71 0.257724
Target:  5'- gCGCAACUGCGCgCG---GCGGCCGUc -3'
miRNA:   3'- aGCGUUGGCGCG-GUcagUGCCGGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.