miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23931 3' -59.7 NC_005262.1 + 63708 0.67 0.440323
Target:  5'- gCGCAGaaGCGUgCGG-CGCGGCCGa- -3'
miRNA:   3'- aGCGUUggCGCG-GUCaGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 63453 0.7 0.313254
Target:  5'- -aGCAGCCGgaGCCGGUCACuGUCGc- -3'
miRNA:   3'- agCGUUGGCg-CGGUCAGUGcCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 63271 0.69 0.34425
Target:  5'- -gGCAGCCGcCGCCuGcuUgACGGCCGg- -3'
miRNA:   3'- agCGUUGGC-GCGGuC--AgUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 58711 0.67 0.440323
Target:  5'- gCGCAccGCCGaGCCGGUCgcACGcGCCGc- -3'
miRNA:   3'- aGCGU--UGGCgCGGUCAG--UGC-CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 58617 0.67 0.421729
Target:  5'- cCGCGcCCGCGCCcgcGaCGcCGGCCGUc -3'
miRNA:   3'- aGCGUuGGCGCGGu--CaGU-GCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 57464 0.66 0.488745
Target:  5'- cCGCGACUacaagcggcggGCGCCgacgAGagGCGGCCGg- -3'
miRNA:   3'- aGCGUUGG-----------CGCGG----UCagUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 57146 0.7 0.283727
Target:  5'- aUCGCGGCCGUGUCGGUCGacaucccCGGCg--- -3'
miRNA:   3'- -AGCGUUGGCGCGGUCAGU-------GCCGgcaa -5'
23931 3' -59.7 NC_005262.1 + 56920 0.67 0.440323
Target:  5'- aCGCGAUCGCgGCCGG-CAUcGCCGa- -3'
miRNA:   3'- aGCGUUGGCG-CGGUCaGUGcCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 56611 0.67 0.430967
Target:  5'- aUGCAAUCGCGCCgcaauuacgcGGUagcggcauGCGGCCGg- -3'
miRNA:   3'- aGCGUUGGCGCGG----------UCAg-------UGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 55759 0.69 0.34425
Target:  5'- aCGCGcGCUGCGUCAGUCcugacGCGaGCCGg- -3'
miRNA:   3'- aGCGU-UGGCGCGGUCAG-----UGC-CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 55651 0.69 0.34425
Target:  5'- cUCGUGGCCGCGuCCGG-CAC-GCCGg- -3'
miRNA:   3'- -AGCGUUGGCGC-GGUCaGUGcCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 55057 0.67 0.44789
Target:  5'- aUCGCGACgggcauggaggaGCGCCGG-CugGGCCu-- -3'
miRNA:   3'- -AGCGUUGg-----------CGCGGUCaGugCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 54898 0.76 0.111222
Target:  5'- aUCGC-GCCGCGCCAGUUcgACGGCuCGc- -3'
miRNA:   3'- -AGCGuUGGCGCGGUCAG--UGCCG-GCaa -5'
23931 3' -59.7 NC_005262.1 + 53600 0.66 0.478854
Target:  5'- uUCGCAACCGCGUCGccgCuCGGCagGUa -3'
miRNA:   3'- -AGCGUUGGCGCGGUca-GuGCCGg-CAa -5'
23931 3' -59.7 NC_005262.1 + 53592 0.68 0.37739
Target:  5'- -aGCAuguACCGCGCaaacgAGUaCACGGUCGUUc -3'
miRNA:   3'- agCGU---UGGCGCGg----UCA-GUGCCGGCAA- -5'
23931 3' -59.7 NC_005262.1 + 53242 0.69 0.320801
Target:  5'- cUGCGGCUGCgcgcgGCCGGUCGCGucggcauaGCCGUUu -3'
miRNA:   3'- aGCGUUGGCG-----CGGUCAGUGC--------CGGCAA- -5'
23931 3' -59.7 NC_005262.1 + 53029 0.71 0.245162
Target:  5'- cCGCGACCa-GCCAGUaCACGGgCGUg -3'
miRNA:   3'- aGCGUUGGcgCGGUCA-GUGCCgGCAa -5'
23931 3' -59.7 NC_005262.1 + 52028 0.66 0.485767
Target:  5'- gCGCGcccaggucggGCCGCGCCAGuuguucgaggaagaUCGCGaaGCCGa- -3'
miRNA:   3'- aGCGU----------UGGCGCGGUC--------------AGUGC--CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 51620 0.67 0.459374
Target:  5'- uUUGCuccuGCCGCGCagaCAG-CGCGGCCu-- -3'
miRNA:   3'- -AGCGu---UGGCGCG---GUCaGUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 50970 0.66 0.478854
Target:  5'- cCGCGagGCCGCGCUccuucuUCACGcGCCGg- -3'
miRNA:   3'- aGCGU--UGGCGCGGuc----AGUGC-CGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.