miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23931 3' -59.7 NC_005262.1 + 44564 0.69 0.360555
Target:  5'- cUCGcCGGCCGauacgcaGgCAGUCACGGUCGa- -3'
miRNA:   3'- -AGC-GUUGGCg------CgGUCAGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 19097 0.69 0.32004
Target:  5'- aUGCAGCCaCGCCGucaccaacggcuuGUCGCGGUCGg- -3'
miRNA:   3'- aGCGUUGGcGCGGU-------------CAGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 43876 0.69 0.328482
Target:  5'- gCGCGAUCGCGCg---CAUGGCCGa- -3'
miRNA:   3'- aGCGUUGGCGCGgucaGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 11034 0.69 0.34425
Target:  5'- gCGCAagACCGCGCgCAG-CAacaGGCCGc- -3'
miRNA:   3'- aGCGU--UGGCGCG-GUCaGUg--CCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 55651 0.69 0.34425
Target:  5'- cUCGUGGCCGCGuCCGG-CAC-GCCGg- -3'
miRNA:   3'- -AGCGUUGGCGC-GGUCaGUGcCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 63271 0.69 0.34425
Target:  5'- -gGCAGCCGcCGCCuGcuUgACGGCCGg- -3'
miRNA:   3'- agCGUUGGC-GCGGuC--AgUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 33329 0.69 0.34425
Target:  5'- aCGCAACUGCGUCGcugCGCGGCacCGUg -3'
miRNA:   3'- aGCGUUGGCGCGGUca-GUGCCG--GCAa -5'
23931 3' -59.7 NC_005262.1 + 10700 0.69 0.351521
Target:  5'- gCGCAgaucgagGCCGCGCgCA--CGCGGCCGg- -3'
miRNA:   3'- aGCGU-------UGGCGCG-GUcaGUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 10493 0.69 0.352335
Target:  5'- -aGCAGCaGCGCCAGcaUgGCGGCCa-- -3'
miRNA:   3'- agCGUUGgCGCGGUC--AgUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 48473 0.7 0.305844
Target:  5'- aUCGCgAGCCGCGUgGG-CACGGgCGg- -3'
miRNA:   3'- -AGCG-UUGGCGCGgUCaGUGCCgGCaa -5'
23931 3' -59.7 NC_005262.1 + 29298 0.7 0.298568
Target:  5'- gCGCAuCCGCGCCGugaACGGCCa-- -3'
miRNA:   3'- aGCGUuGGCGCGGUcagUGCCGGcaa -5'
23931 3' -59.7 NC_005262.1 + 57146 0.7 0.283727
Target:  5'- aUCGCGGCCGUGUCGGUCGacaucccCGGCg--- -3'
miRNA:   3'- -AGCGUUGGCGCGGUCAGU-------GCCGgcaa -5'
23931 3' -59.7 NC_005262.1 + 54898 0.76 0.111222
Target:  5'- aUCGC-GCCGCGCCAGUUcgACGGCuCGc- -3'
miRNA:   3'- -AGCGuUGGCGCGGUCAG--UGCCG-GCaa -5'
23931 3' -59.7 NC_005262.1 + 17189 0.75 0.138146
Target:  5'- aCGCGACCGCGuUCAG-CAaGGCCGUUa -3'
miRNA:   3'- aGCGUUGGCGC-GGUCaGUgCCGGCAA- -5'
23931 3' -59.7 NC_005262.1 + 29165 0.73 0.19993
Target:  5'- gCGCGACCauGCGUCAG--GCGGCCGUc -3'
miRNA:   3'- aGCGUUGG--CGCGGUCagUGCCGGCAa -5'
23931 3' -59.7 NC_005262.1 + 76 0.72 0.212681
Target:  5'- cUCGCGaagaagucgGCCGCGCCGcacgcuucugcgcauGUCAcCGGCCGg- -3'
miRNA:   3'- -AGCGU---------UGGCGCGGU---------------CAGU-GCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 53029 0.71 0.245162
Target:  5'- cCGCGACCa-GCCAGUaCACGGgCGUg -3'
miRNA:   3'- aGCGUUGGcgCGGUCA-GUGCCgGCAa -5'
23931 3' -59.7 NC_005262.1 + 48054 0.71 0.251378
Target:  5'- cCGCAAgCGCGUCGGUCGCaccuGCCGc- -3'
miRNA:   3'- aGCGUUgGCGCGGUCAGUGc---CGGCaa -5'
23931 3' -59.7 NC_005262.1 + 50275 0.71 0.251378
Target:  5'- gCGCGcCCGCGCCGgccgagcccGUgACGGCCGc- -3'
miRNA:   3'- aGCGUuGGCGCGGU---------CAgUGCCGGCaa -5'
23931 3' -59.7 NC_005262.1 + 28169 0.71 0.257724
Target:  5'- gCGCAACUGCGCgCG---GCGGCCGUc -3'
miRNA:   3'- aGCGUUGGCGCG-GUcagUGCCGGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.