Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23931 | 3' | -59.7 | NC_005262.1 | + | 44564 | 0.69 | 0.360555 |
Target: 5'- cUCGcCGGCCGauacgcaGgCAGUCACGGUCGa- -3' miRNA: 3'- -AGC-GUUGGCg------CgGUCAGUGCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 10493 | 0.69 | 0.352335 |
Target: 5'- -aGCAGCaGCGCCAGcaUgGCGGCCa-- -3' miRNA: 3'- agCGUUGgCGCGGUC--AgUGCCGGcaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 28169 | 0.71 | 0.257724 |
Target: 5'- gCGCAACUGCGCgCG---GCGGCCGUc -3' miRNA: 3'- aGCGUUGGCGCG-GUcagUGCCGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 50275 | 0.71 | 0.251378 |
Target: 5'- gCGCGcCCGCGCCGgccgagcccGUgACGGCCGc- -3' miRNA: 3'- aGCGUuGGCGCGGU---------CAgUGCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 48054 | 0.71 | 0.251378 |
Target: 5'- cCGCAAgCGCGUCGGUCGCaccuGCCGc- -3' miRNA: 3'- aGCGUUgGCGCGGUCAGUGc---CGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 53029 | 0.71 | 0.245162 |
Target: 5'- cCGCGACCa-GCCAGUaCACGGgCGUg -3' miRNA: 3'- aGCGUUGGcgCGGUCA-GUGCCgGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 76 | 0.72 | 0.212681 |
Target: 5'- cUCGCGaagaagucgGCCGCGCCGcacgcuucugcgcauGUCAcCGGCCGg- -3' miRNA: 3'- -AGCGU---------UGGCGCGGU---------------CAGU-GCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 29165 | 0.73 | 0.19993 |
Target: 5'- gCGCGACCauGCGUCAG--GCGGCCGUc -3' miRNA: 3'- aGCGUUGG--CGCGGUCagUGCCGGCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 17189 | 0.75 | 0.138146 |
Target: 5'- aCGCGACCGCGuUCAG-CAaGGCCGUUa -3' miRNA: 3'- aGCGUUGGCGC-GGUCaGUgCCGGCAA- -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 54898 | 0.76 | 0.111222 |
Target: 5'- aUCGC-GCCGCGCCAGUUcgACGGCuCGc- -3' miRNA: 3'- -AGCGuUGGCGCGGUCAG--UGCCG-GCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 57146 | 0.7 | 0.283727 |
Target: 5'- aUCGCGGCCGUGUCGGUCGacaucccCGGCg--- -3' miRNA: 3'- -AGCGUUGGCGCGGUCAGU-------GCCGgcaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 29298 | 0.7 | 0.298568 |
Target: 5'- gCGCAuCCGCGCCGugaACGGCCa-- -3' miRNA: 3'- aGCGUuGGCGCGGUcagUGCCGGcaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 10700 | 0.69 | 0.351521 |
Target: 5'- gCGCAgaucgagGCCGCGCgCA--CGCGGCCGg- -3' miRNA: 3'- aGCGU-------UGGCGCG-GUcaGUGCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 33329 | 0.69 | 0.34425 |
Target: 5'- aCGCAACUGCGUCGcugCGCGGCacCGUg -3' miRNA: 3'- aGCGUUGGCGCGGUca-GUGCCG--GCAa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 63271 | 0.69 | 0.34425 |
Target: 5'- -gGCAGCCGcCGCCuGcuUgACGGCCGg- -3' miRNA: 3'- agCGUUGGC-GCGGuC--AgUGCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 55651 | 0.69 | 0.34425 |
Target: 5'- cUCGUGGCCGCGuCCGG-CAC-GCCGg- -3' miRNA: 3'- -AGCGUUGGCGC-GGUCaGUGcCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 11034 | 0.69 | 0.34425 |
Target: 5'- gCGCAagACCGCGCgCAG-CAacaGGCCGc- -3' miRNA: 3'- aGCGU--UGGCGCG-GUCaGUg--CCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 43876 | 0.69 | 0.328482 |
Target: 5'- gCGCGAUCGCGCg---CAUGGCCGa- -3' miRNA: 3'- aGCGUUGGCGCGgucaGUGCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 19097 | 0.69 | 0.32004 |
Target: 5'- aUGCAGCCaCGCCGucaccaacggcuuGUCGCGGUCGg- -3' miRNA: 3'- aGCGUUGGcGCGGU-------------CAGUGCCGGCaa -5' |
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23931 | 3' | -59.7 | NC_005262.1 | + | 48473 | 0.7 | 0.305844 |
Target: 5'- aUCGCgAGCCGCGUgGG-CACGGgCGg- -3' miRNA: 3'- -AGCG-UUGGCGCGgUCaGUGCCgGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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